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CAZyme Information: MGYG000003949_01349

You are here: Home > Sequence: MGYG000003949_01349

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Eubacterium_F sp900539115
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Eubacterium_F; Eubacterium_F sp900539115
CAZyme ID MGYG000003949_01349
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2153 244987.64 4.7313
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003949 2807569 MAG United Kingdom Europe
Gene Location Start: 93;  End: 6554  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003949_01349.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 8.45e-75 1137 1658 1 540
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4646 COG4646 2.35e-26 1753 1990 397 637
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG0827 YtxK 9.21e-09 973 1124 207 348
Adenine-specific DNA methylase [Replication, recombination and repair].
smart00487 DEXDc 4.23e-08 1602 1705 7 110
DEAD-like helicases superfamily.
cd18011 DEXDc_RapA 2.92e-07 1604 1663 1 62
DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASV45029.1 1.35e-297 835 2135 1542 2917
QIW86704.1 2.92e-296 835 2135 1610 2985
QIW86628.1 2.92e-296 835 2135 1610 2985
AEY69616.1 5.70e-286 841 2135 1689 3061
AXF51455.1 5.03e-285 841 2135 1782 3154

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 7.01e-31 878 1958 68 1225
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000018 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003949_01349.