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CAZyme Information: MGYG000003949_01650

You are here: Home > Sequence: MGYG000003949_01650

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Eubacterium_F sp900539115
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Eubacterium_F; Eubacterium_F sp900539115
CAZyme ID MGYG000003949_01650
CAZy Family GH10
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
554 61846.81 9.0629
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003949 2807569 MAG United Kingdom Europe
Gene Location Start: 23875;  End: 25539  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8 3.1.1.73

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 172 550 4e-74 0.9603960396039604

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00331 Glyco_hydro_10 5.92e-65 167 549 5 310
Glycosyl hydrolase family 10.
smart00633 Glyco_10 2.60e-60 247 547 12 263
Glycosyl hydrolase family 10.
COG3693 XynA 2.76e-46 191 549 47 339
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
NF038053 hist_H1_lk_Burk 7.43e-04 11 150 34 170
histone H1-like DNA-binding protein. This model describes histone H1-like repetitive basic proteins as found in Burkholderia and related species. It excludes the Hc2 family found in Chlamydia and involved in DNA condensation for the formation of elementary bodies.
pfam07382 HC2 0.002 28 159 29 161
Histone H1-like nucleoprotein HC2. This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CDM69886.1 4.52e-105 158 553 199 560
ABX41884.1 7.42e-102 160 550 167 514
QFJ54853.1 1.50e-99 162 550 37 381
AFU34339.1 8.83e-99 156 550 167 519
BCJ93966.1 2.44e-96 160 552 164 514

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2W5F_A 5.77e-36 160 546 180 523
ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2W5F_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus]
7NL2_A 2.42e-35 198 550 40 340
ChainA, Beta-xylanase [Pseudothermotoga thermarum DSM 5069],7NL2_B Chain B, Beta-xylanase [Pseudothermotoga thermarum DSM 5069]
6FHE_A 2.53e-35 200 548 44 339
Highlyactive enzymes by automated modular backbone assembly and sequence design [synthetic construct]
6D5C_A 8.27e-35 156 550 16 350
Structureof Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321 [Caldicellulosiruptor danielii],6D5C_B Structure of Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321 [Caldicellulosiruptor danielii],6D5C_C Structure of Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321 [Caldicellulosiruptor danielii]
3W24_A 1.61e-34 200 552 40 328
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from Thermoanaerobacterium saccharolyticum JW/SL-YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P23551 3.71e-84 160 550 35 382
Endo-1,4-beta-xylanase A OS=Butyrivibrio fibrisolvens OX=831 GN=xynA PE=3 SV=1
P26223 5.03e-38 200 551 33 338
Endo-1,4-beta-xylanase B OS=Butyrivibrio fibrisolvens OX=831 GN=xynB PE=3 SV=1
P51584 3.63e-35 160 546 191 534
Endo-1,4-beta-xylanase Y OS=Acetivibrio thermocellus OX=1515 GN=xynY PE=1 SV=1
Q60037 1.16e-34 193 533 393 676
Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1
P29126 2.56e-34 197 552 655 954
Bifunctional endo-1,4-beta-xylanase XylA OS=Ruminococcus flavefaciens OX=1265 GN=xynA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000442 0.998823 0.000203 0.000208 0.000172 0.000138

TMHMM  Annotations      download full data without filtering help

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