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CAZyme Information: MGYG000003952_01179

You are here: Home > Sequence: MGYG000003952_01179

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Alistipes sp900021155
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes sp900021155
CAZyme ID MGYG000003952_01179
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
503 MGYG000003952_5|CGC1 55714.1 6.8402
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003952 2320359 MAG United Kingdom Europe
Gene Location Start: 39570;  End: 41081  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003952_01179.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 47 402 2.2e-61 0.9230769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.92e-48 20 332 81 396
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02188 PLN02188 3.27e-14 3 328 6 345
polygalacturonase/glycoside hydrolase family protein
pfam00295 Glyco_hydro_28 3.92e-12 172 330 88 237
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 2.34e-11 2 296 4 284
Probable polygalacturonase At3g15720
pfam12708 Pectate_lyase_3 2.40e-10 23 310 3 213
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AMJ66331.1 1.63e-114 1 484 1 489
AMR25945.1 4.80e-112 19 483 19 489
AWM31556.1 1.40e-102 10 485 13 496
QHW33703.1 2.86e-77 22 473 5 457
QJD86476.1 6.13e-75 20 469 9 456

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 2.90e-23 22 246 45 275
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 3.19e-21 27 246 33 265
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
4MXN_A 1.73e-15 22 248 22 225
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
2UVE_A 2.46e-11 17 251 152 413
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P35339 1.17e-10 22 246 41 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1
P15922 5.42e-10 23 251 153 406
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
Q05967 3.37e-09 17 284 22 271
Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1
Q9LW07 2.88e-08 23 246 25 215
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
Q7M1E7 7.40e-08 19 246 56 260
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000435 0.998648 0.000248 0.000214 0.000209 0.000201

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003952_01179.