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CAZyme Information: MGYG000003994_01528
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA11471; UBA11471; | |||||||||||
| CAZyme ID | MGYG000003994_01528 | |||||||||||
| CAZy Family | PL9 | |||||||||||
| CAZyme Description | Pectate lyase L | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1028; End: 2566 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL9 | 13 | 406 | 2.4e-89 | 0.9893333333333333 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam13229 | Beta_helix | 2.49e-04 | 130 | 244 | 4 | 122 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| pfam13229 | Beta_helix | 3.92e-04 | 95 | 236 | 15 | 138 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BCS85044.1 | 2.54e-122 | 16 | 440 | 6 | 448 |
| ATB42709.1 | 1.83e-68 | 6 | 428 | 66 | 457 |
| QQY82139.1 | 4.02e-62 | 35 | 432 | 36 | 400 |
| AEN74282.1 | 1.09e-60 | 14 | 434 | 21 | 396 |
| ACY49268.1 | 1.09e-60 | 14 | 434 | 21 | 396 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1RU4_A | 3.45e-54 | 14 | 427 | 15 | 398 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
| 5OLQ_A | 1.14e-09 | 13 | 412 | 2 | 426 | Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0C1A7 | 3.41e-53 | 14 | 427 | 40 | 423 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
| P0C1A6 | 1.34e-50 | 14 | 427 | 40 | 423 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.418644 | 0.580267 | 0.000274 | 0.000375 | 0.000217 | 0.000207 |