CAZyme Information: MGYG000004019_01129

Basic Information

• Species: Bacteroides massiliensis_A
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides massiliensis_A
• CAZyme ID: MGYG000004019_01129
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1005		111887.97	8.2447

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004019	3250001	MAG	United Kingdom	Europe

• Gene Location: Start: 87856; End: 90873 Strand: -

Full Sequence      

MAVLTLLFFVRPSTDASARRMSPVSPSQGEPSFLYALQDDERCRQWVDSVMHTLSLKERI
GQLFVYTIAPTQTKANVELLRKVVKHYKVGGLLFSAGSVPGQVALTNLAQEWADVPLMIT
LDGEWGLAMRLKNTPEFPRNMVLGCVRNDSLLYEYGREVARECREMGIHVNFAPVADVNI
NPDNPVINSRSFGEDPAEVARKVVAYARGLEDGGVLSVGKHFPGHGDTNVDSHKALPTLR
FTRQRLDSVELYPFRRMIEAGLNGIMVGHLAVPEIEGAENVPASLSRRVAHDLLAGELGF
KGLVFTDALAMKGVQGEGSVCLRALQAGNDLLLVPRRIKEEVEAVVHAVRHGQLSREDID
RRCRKVLTYKYALGLRSKPYVRLSGLTTRLNTPYVRDLVSRLKLAAITVLDNKNETLPLD
PTLKDVAVLEVGGGTDLTPLMQELSIFVDPVKFDVARKMDATRQAALKKKLAGYRRIVVC
VTDEQWADYQSFFEGGLPDGVPVVYTLFVQGHKLDEKLRHDLAQASAVVLAHSADEDVQR
RTVDILYGSADADGRLSASIGNLYAAGSGLQMSRKTLRHYNPDEHGMSSRILAQIDDIAE
EGIRKGAFPGCQVVVWKDGREMYNKAFGTLAGEGSRAVRPTDVYDLASLTKTTATLLAVM
KLYDEGRLSLTDYASDYLPFLKGTDKEHITLNDLLLHESGLPSTLLFYQDAIDKDSYTGP
LFKSRADRQHTVRVGRDTWANPRFRFRSGLTSAVRTDSCTLHVADSLWLAVSFKDEMMRK
IVSARLRDKRYRYSCVGFILLQQVVEACAGMPLDEFVDREFYRPMGLTHTGFRPLRFLSK
ADIVPSSVDDFLRKDTLRGFVHDESAAFLGGVSGNAGLFSNASEVARIYQMLLNGGTWDG
RRYLSEETCRLFTTQTSRFSRRGLGFDKPDVKHPKSNPCCDSAPASVYGHTGFTGTCAWV
DPDNGLVYVFLSNRIYPHVWNGLLMELDVRGRIQETLYRALKDKR

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	109	334	1.6e-60	0.9861111111111112

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	2.14e-82	54	439	1	368	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	2.98e-81	55	368	1	315	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	2.50e-59	577	1002	25	432	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	2.47e-45	595	979	1	313	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	2.82e-41	582	977	28	366	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRQ48901.1	0.0	8	1001	14	1010
QUT44551.1	0.0	8	1001	14	1010
QBJ17996.1	0.0	1	1001	7	1009
QUT62072.1	0.0	1	1001	7	1009
QQA30538.1	0.0	1	1001	7	1009

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	1.28e-67	54	507	11	471	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	3.74e-58	48	421	36	449	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.09e-57	48	421	10	423	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	1.91e-57	48	421	40	453	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	6.55e-53	51	359	12	335	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.05e-57	48	421	36	449	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.11e-45	80	419	55	425	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	3.62e-43	577	1004	25	434	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	1.21e-42	577	1004	25	434	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
O05213	1.16e-41	581	1002	38	441	N-acetylmuramyl-L-alanine amidase OS=Bacillus subtilis (strain 168) OX=224308 GN=amiE PE=1 SV=3

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.425359	0.573148	0.000410	0.000377	0.000337	0.000372

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004019_01129.