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CAZyme Information: MGYG000004022_00316

You are here: Home > Sequence: MGYG000004022_00316

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species HGM13222 sp900757485
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; HGM13222; HGM13222 sp900757485
CAZyme ID MGYG000004022_00316
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
639 MGYG000004022_1|CGC3 72153.22 5.697
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004022 2646660 MAG United Kingdom Europe
Gene Location Start: 309535;  End: 311454  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004022_00316.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 175 435 1.2e-38 0.7415384615384616

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 7.14e-12 209 341 239 368
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 0.007 209 341 86 209
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUU07174.1 1.70e-180 15 625 51 671
QMV67078.1 1.48e-54 3 624 32 663
SDS06655.1 1.30e-47 12 458 39 509
APA66227.1 5.06e-47 12 458 26 496
SCM55434.1 1.51e-46 15 450 27 467

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 7.72e-09 211 332 203 320
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000040 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004022_00316.