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CAZyme Information: MGYG000004022_00317

You are here: Home > Sequence: MGYG000004022_00317

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species HGM13222 sp900757485
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; HGM13222; HGM13222 sp900757485
CAZyme ID MGYG000004022_00317
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
549 MGYG000004022_1|CGC3 59863.03 4.9938
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004022 2646660 MAG United Kingdom Europe
Gene Location Start: 311429;  End: 313078  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004022_00317.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 273 530 5.4e-31 0.7446153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 7.90e-09 311 466 247 397
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02793 PLN02793 4.34e-05 275 381 138 259
Probable polygalacturonase
pfam00295 Glyco_hydro_28 0.001 303 549 86 304
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUU07174.1 3.79e-179 107 548 49 489
QTH43708.1 4.75e-48 104 497 2 414
AXC14441.1 7.72e-44 150 548 86 477
SDS06655.1 9.11e-44 109 495 42 436
APA66227.1 1.91e-43 109 495 29 423

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1WMR_A 9.45e-09 133 458 56 431
CrystalStructure of Isopullulanase from Aspergillus niger ATCC 9642 [Aspergillus niger],1WMR_B Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 [Aspergillus niger],1X0C_A Improved Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 [Aspergillus niger],1X0C_B Improved Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 [Aspergillus niger],2Z8G_A Aspergillus niger ATCC9642 isopullulanase complexed with isopanose [Aspergillus niger],2Z8G_B Aspergillus niger ATCC9642 isopullulanase complexed with isopanose [Aspergillus niger]
3WWG_A 9.45e-09 133 458 56 431
Crystalstructure of the N-glycan-deficient variant N448A of isopullulanase complexed with isopanose [Aspergillus niger],3WWG_B Crystal structure of the N-glycan-deficient variant N448A of isopullulanase complexed with isopanose [Aspergillus niger],3WWG_C Crystal structure of the N-glycan-deficient variant N448A of isopullulanase complexed with isopanose [Aspergillus niger],3WWG_D Crystal structure of the N-glycan-deficient variant N448A of isopullulanase complexed with isopanose [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O00105 5.27e-08 133 458 71 446
Isopullulanase OS=Aspergillus niger OX=5061 GN=ipuA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000103 0.003104 0.996814 0.000002 0.000003 0.000002

TMHMM  Annotations      download full data without filtering help

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