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CAZyme Information: MGYG000004057_00363
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; | |||||||||||
| CAZyme ID | MGYG000004057_00363 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 302; End: 3214 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 262 | 448 | 1.1e-52 | 0.9179487179487179 |
| CBM13 | 563 | 704 | 8.9e-21 | 0.6914893617021277 |
| CBM13 | 716 | 878 | 1.1e-16 | 0.8031914893617021 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 6.76e-44 | 187 | 519 | 33 | 340 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam00544 | Pec_lyase_C | 4.03e-20 | 262 | 445 | 30 | 208 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| smart00656 | Amb_all | 1.71e-19 | 260 | 448 | 10 | 186 | Amb_all domain. |
| pfam14200 | RicinB_lectin_2 | 2.74e-19 | 645 | 743 | 1 | 89 | Ricin-type beta-trefoil lectin domain-like. |
| pfam14200 | RicinB_lectin_2 | 2.32e-17 | 599 | 688 | 5 | 89 | Ricin-type beta-trefoil lectin domain-like. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL16867.1 | 0.0 | 33 | 961 | 31 | 912 |
| CDM68184.1 | 1.97e-114 | 39 | 618 | 30 | 584 |
| AKQ74328.1 | 5.73e-95 | 37 | 532 | 30 | 488 |
| AJO19478.1 | 7.99e-95 | 37 | 532 | 30 | 488 |
| QEO08224.1 | 7.99e-95 | 37 | 532 | 30 | 488 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5M2S_B | 4.13e-12 | 903 | 969 | 29 | 103 | R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1] |
| 5M2O_B | 7.71e-11 | 903 | 968 | 29 | 94 | R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1] |
| 3ZSC_A | 1.22e-10 | 200 | 425 | 14 | 212 | Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
| 5B2H_A | 8.00e-08 | 629 | 755 | 163 | 280 | Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum] |
| 5N5P_B | 3.39e-06 | 903 | 968 | 9 | 84 | Crystalstructure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1],5N5P_D Crystal structure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P94449 | 9.74e-61 | 186 | 522 | 34 | 338 | Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1 |
| O34819 | 2.32e-59 | 186 | 522 | 34 | 338 | Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1 |
| P27027 | 2.05e-49 | 200 | 521 | 12 | 304 | Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2 |
| P24112 | 2.36e-41 | 184 | 523 | 7 | 308 | Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1 |
| Q00645 | 1.00e-12 | 193 | 425 | 39 | 234 | Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as LIPO
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.146342 | 0.223365 | 0.620277 | 0.003783 | 0.002330 | 0.003903 |
