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CAZyme Information: MGYG000004067_01105

You are here: Home > Sequence: MGYG000004067_01105

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; ;
CAZyme ID MGYG000004067_01105
CAZy Family CBM13
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
829 MGYG000004067_51|CGC1 89290.57 4.8333
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004067 1958521 MAG United Kingdom Europe
Gene Location Start: 6367;  End: 8856  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004067_01105.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 559 754 1.6e-79 0.9897435897435898
CBM13 207 371 2.7e-24 0.824468085106383
CBM13 41 193 6.1e-21 0.7446808510638298

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 9.28e-51 508 819 27 341
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 6.56e-40 569 754 26 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656 Amb_all 1.04e-35 565 758 4 190
Amb_all domain.
pfam14200 RicinB_lectin_2 8.70e-20 174 285 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 7.33e-19 243 334 1 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CDM68184.1 9.50e-122 364 822 25 486
VEB20252.1 2.07e-110 407 827 71 486
QII50179.1 2.91e-110 407 827 71 486
ARC69127.1 1.13e-109 409 827 73 486
AKQ74328.1 1.59e-109 409 827 73 486

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 4.19e-10 530 731 21 212
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
3KRG_A 2.60e-06 573 755 123 326
ChainA, Pectate lyase [Bacillus subtilis]
5AMV_A 2.60e-06 573 755 123 326
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 2.73e-06 573 755 144 347
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 6.29e-06 573 755 144 347
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 1.25e-89 511 826 35 343
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 2.83e-86 511 826 35 343
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 9.08e-81 528 826 18 310
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 3.91e-78 528 826 18 312
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q00645 8.27e-18 517 731 39 234
Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000393 0.998861 0.000172 0.000232 0.000167 0.000146

TMHMM  Annotations      download full data without filtering help

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