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CAZyme Information: MGYG000004072_00180
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UMGS1540 sp900552775 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; UMGS1883; UMGS1883; UMGS1540; UMGS1540 sp900552775 | |||||||||||
| CAZyme ID | MGYG000004072_00180 | |||||||||||
| CAZy Family | PL35 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 247498; End: 251811 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL35 | 950 | 1133 | 8.4e-49 | 0.9720670391061452 |
| CBM32 | 1314 | 1431 | 1.1e-17 | 0.8951612903225806 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam07833 | Cu_amine_oxidN1 | 1.30e-23 | 469 | 556 | 1 | 90 | Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other. |
| pfam00754 | F5_F8_type_C | 2.73e-14 | 1309 | 1431 | 1 | 127 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam07833 | Cu_amine_oxidN1 | 5.64e-08 | 450 | 499 | 44 | 93 | Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other. |
| pfam16332 | DUF4962 | 7.37e-08 | 599 | 820 | 169 | 362 | Domain of unknown function (DUF4962). This family consists of uncharacterized proteins around 870 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown. |
| pfam07940 | Hepar_II_III | 0.001 | 958 | 1135 | 28 | 196 | Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ALS27107.1 | 6.45e-135 | 562 | 1430 | 653 | 1507 |
| QUH30172.1 | 3.20e-133 | 590 | 1432 | 56 | 891 |
| AZS17848.1 | 1.73e-132 | 288 | 1432 | 115 | 1275 |
| QNK58643.1 | 3.08e-129 | 586 | 1431 | 773 | 1606 |
| QNK56587.1 | 6.46e-110 | 605 | 1432 | 219 | 1024 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7D29_A | 1.44e-22 | 1310 | 1431 | 12 | 129 | CBM32of AlyQ [Persicobacter sp. CCB-QB2],7D2A_A CBM32 of AlyQ in complex with 4,5-unsaturated mannuronic acid [Persicobacter sp. CCB-QB2] |
| 5XNR_A | 2.19e-20 | 1310 | 1431 | 12 | 129 | TruncatedAlyQ with CBM32 and alginate lyase domains [Persicobacter sp. CCB-QB2] |
| 5ZU6_A | 2.11e-12 | 1308 | 1433 | 33 | 156 | ACBM32 derived from alginate lyase B (AlyB-OU02) [Vibrio] |
| 5ZU5_A | 5.87e-11 | 1308 | 1433 | 33 | 156 | Crystalstructure of a full length alginate lyase with CBM domain [Vibrio splendidus] |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.001056 | 0.832620 | 0.165498 | 0.000283 | 0.000265 | 0.000248 |
