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CAZyme Information: MGYG000004116_01579

You are here: Home > Sequence: MGYG000004116_01579

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; UMGS1591;
CAZyme ID MGYG000004116_01579
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
482 MGYG000004116_8|CGC1 53011.36 5.2127
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004116 3787047 MAG United Kingdom Europe
Gene Location Start: 21466;  End: 22914  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004116_01579.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 160 459 1.6e-52 0.8861538461538462

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.18e-25 158 360 117 366
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 2.28e-07 215 324 111 228
Probable polygalacturonase At3g15720
pfam13229 Beta_helix 5.91e-06 240 358 3 113
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
PLN03010 PLN03010 6.31e-06 195 314 118 236
polygalacturonase
PLN02793 PLN02793 7.12e-06 219 318 145 260
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QTH41144.1 2.31e-119 14 460 29 468
QJD84919.1 5.66e-118 4 467 27 482
QNK57055.1 1.52e-105 8 453 12 458
AZS17007.1 2.46e-99 14 468 28 474
AWW32777.1 1.16e-53 30 479 34 499

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 2.35e-13 158 357 62 316
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 7.24e-12 161 458 82 426
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.53e-07 156 314 98 278
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.984873 0.013209 0.001721 0.000057 0.000030 0.000124

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004116_01579.