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CAZyme Information: MGYG000004133_01118

You are here: Home > Sequence: MGYG000004133_01118

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; HGM11514; HGM11514; ;
CAZyme ID MGYG000004133_01118
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
701 79668.36 4.6292
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004133 2160156 MAG United Kingdom Europe
Gene Location Start: 10943;  End: 13048  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004133_01118.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 123 403 1.3e-40 0.8307692307692308

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.22e-09 181 355 244 421
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.27e-05 176 410 86 287
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 6.30e-05 174 256 156 237
polygalacturonase
PLN02793 PLN02793 6.18e-04 183 246 185 250
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ93866.1 5.56e-225 3 701 2 716
BCJ98361.1 8.10e-216 3 700 2 715
ABX43664.1 4.46e-57 5 411 81 507
SDS06655.1 1.94e-56 4 419 55 508
APA66227.1 2.80e-56 4 419 42 495

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000063 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004133_01118.