dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000004151_00582

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Basic Information help

Species

Pseudomonas citronellolis

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas citronellolis

CAZyme ID

MGYG000004151_00582

CAZy Family

AA3

CAZyme Description

putative GMC-type oxidoreductase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
543	MGYG000004151_3\|CGC1	59791.51	6.9531

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004151	7110046	MAG	United Kingdom	Europe

Gene Location

Start: 127504; End: 129135 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000004151_00582.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
AA3	5	533	1.5e-165	0.9964788732394366

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK02106	PRK02106	0.0	4	531	3	531	choline dehydrogenase; Validated
COG2303	BetA	4.16e-166	4	536	5	538	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
TIGR01810	betA	1.39e-155	8	531	1	526	choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions]
TIGR03970	Rv0697	2.69e-91	8	531	2	486	dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
pfam05199	GMC_oxred_C	2.60e-49	391	527	1	143	GMC oxidoreductase. This domain found associated with pfam00732.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QWC20507.1	3.25e-131	5	531	4	524
CAB3230510.1	1.75e-119	2	534	20	558
AWP09430.1	2.32e-115	4	531	17	550
ANI26486.1	1.54e-113	4	531	68	601
CAG5089487.1	5.20e-102	5	531	15	558

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6ZH7_A	4.82e-87	4	543	5	572	ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS2_AAA	4.82e-87	5	543	6	572	ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6YS1_AAA	6.77e-87	5	543	6	572	ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6YRU_AAA	6.77e-87	5	543	6	572	ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
5NCC_A	1.01e-86	5	543	22	588	Structureof Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q988C9	1.34e-137	1	535	1	537	4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
Q8D3K2	4.16e-126	5	535	3	534	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
Q7MF12	4.16e-126	5	535	3	534	Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1
A4XPI5	1.08e-124	4	531	2	533	Oxygen-dependent choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=betA PE=3 SV=1
A7N2P9	1.22e-124	5	532	3	531	Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=1224742 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.999797	0.000146	0.000095	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000004151_00582.