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CAZyme Information: MGYG000004169_01377

You are here: Home > Sequence: MGYG000004169_01377

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; UMGS2037;
CAZyme ID MGYG000004169_01377
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
521 57754.43 4.4049
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004169 2353220 MAG United Kingdom Europe
Gene Location Start: 1091;  End: 2656  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004169_01377.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 234 507 7.5e-39 0.7661538461538462

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.40e-11 132 341 45 315
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.30e-05 261 421 81 237
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 7.89e-05 247 424 119 292
Probable polygalacturonase At3g15720
PLN02793 PLN02793 0.003 245 345 147 260
Probable polygalacturonase
smart00557 IG_FLMN 0.005 124 179 31 80
Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX43664.1 4.69e-237 17 521 13 518
BCK00431.1 9.54e-223 16 521 15 520
ACI19833.1 5.22e-140 43 510 28 474
ACK41503.1 1.65e-138 43 510 28 474
QTE67472.1 1.03e-129 48 512 33 479

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.07e-08 209 342 136 278
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.989131 0.008037 0.000838 0.000059 0.000031 0.001942

TMHMM  Annotations      download full data without filtering help

start end
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