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CAZyme Information: MGYG000004172_00056
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; ; | |||||||||||
| CAZyme ID | MGYG000004172_00056 | |||||||||||
| CAZy Family | PL38 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 68016; End: 69170 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL38 | 57 | 330 | 3.3e-93 | 0.996415770609319 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam05426 | Alginate_lyase | 2.57e-76 | 56 | 330 | 1 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
| cd00244 | AlgLyase | 6.43e-04 | 228 | 343 | 178 | 286 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam16889 | Hepar_II_III_N | 0.002 | 121 | 333 | 110 | 321 | Heparinase II/III N-terminus. This is the N-terminal domain of heparinase II/III proteins. It is a toroid-like domain. |
| PRK00325 | algL | 0.009 | 228 | 329 | 194 | 296 | polysaccharide lyase. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QNL39956.1 | 8.87e-139 | 16 | 384 | 25 | 398 |
| QIU93437.1 | 9.52e-136 | 16 | 384 | 25 | 398 |
| QUT26274.1 | 3.84e-135 | 16 | 384 | 25 | 398 |
| QNT66841.1 | 5.01e-101 | 27 | 384 | 35 | 394 |
| QEC55803.1 | 1.53e-80 | 3 | 366 | 22 | 387 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3NFV_A | 1.10e-58 | 38 | 378 | 29 | 362 | Crystalstructure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution [Bacteroides ovatus ATCC 8483],3NNB_A Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution [Bacteroides ovatus ATCC 8483] |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000029 | 0.000028 | 0.000004 | 0.000000 | 0.000000 | 0.000000 |