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CAZyme Information: MGYG000004172_01893

You are here: Home > Sequence: MGYG000004172_01893

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; ;
CAZyme ID MGYG000004172_01893
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
428 MGYG000004172_8|CGC1 47356.16 8.7938
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004172 3050906 MAG United Kingdom Europe
Gene Location Start: 11963;  End: 13249  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004172_01893.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 151 403 3.3e-43 0.7476923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.59e-10 160 391 213 409
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02793 PLN02793 8.53e-08 150 273 129 265
Probable polygalacturonase
PLN03010 PLN03010 1.04e-06 162 349 137 354
polygalacturonase
pfam00295 Glyco_hydro_28 1.06e-05 158 374 48 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 1.53e-05 168 306 117 288
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT73849.1 4.56e-157 22 427 33 438
QDA61654.1 8.91e-53 33 412 63 451
SCV09027.1 4.78e-45 35 399 62 434
ALJ44694.1 4.78e-45 35 399 62 434
QRQ56374.1 4.78e-45 35 399 62 434

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q94AJ5 5.87e-06 150 400 129 390
Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.017625 0.397593 0.581921 0.001452 0.000715 0.000688

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004172_01893.