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CAZyme Information: MGYG000004182_00469

You are here: Home > Sequence: MGYG000004182_00469

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola sp900551445
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp900551445
CAZyme ID MGYG000004182_00469
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
466 MGYG000004182_6|CGC1 51423.14 5.1045
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004182 3344512 MAG United Kingdom Europe
Gene Location Start: 6642;  End: 8042  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004182_00469.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 51 401 3.4e-66 0.9323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.28e-59 26 307 82 390
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02188 PLN02188 5.70e-24 1 377 1 354
polygalacturonase/glycoside hydrolase family protein
PLN03010 PLN03010 8.63e-24 26 374 46 379
polygalacturonase
PLN02218 PLN02218 3.16e-22 1 313 45 343
polygalacturonase ADPG
pfam00295 Glyco_hydro_28 3.80e-18 53 311 1 235
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADY36938.1 1.34e-262 2 463 6 467
ALJ60362.1 1.31e-250 1 455 1 457
QUT88631.1 3.74e-250 1 455 1 457
QDO68557.1 8.77e-249 1 463 1 465
QEW34965.1 2.12e-240 1 463 1 465

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 4.21e-22 27 277 45 319
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 6.28e-20 28 241 29 270
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
2UVE_A 4.04e-13 21 234 151 405
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4C2L_A 3.97e-11 34 277 23 250
Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
1BHE_A 6.10e-07 44 237 27 229
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 3.15e-24 28 270 64 314
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q8RY29 5.62e-19 14 238 57 271
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P35338 9.10e-18 3 236 4 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1
P35339 9.10e-18 21 236 35 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1
P26216 7.12e-17 3 236 4 238
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000001 1.000063 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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