CAZyme Information: MGYG000004230_03153

Basic Information

• Species: Clostridium sp900759995
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp900759995
• CAZyme ID: MGYG000004230_03153
• CAZy Family: GH136
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
657	MGYG000004230_146|CGC1	72490.63	4.9514

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004230	3516057	MAG	United Kingdom	Europe

• Gene Location: Start: 4417; End: 6390 Strand: -

Full Sequence      

MKKKDFIRIICFVLSLGMFNFAFTRNASAIEEVNRTYGRDYYISSINGNNNNDGTTSSKA
WETLDKINDIELQPGDRVLLEAGSVFSNGFLHIKGSGSQVAPIEIDKYGEGQNPRIDTNG
QGIWYQDYGKPLDNPAHKSKGYVSSSILLYDVEYINIRNLEITNKALDIDANYNSLNAMN
RTGVAAVAQNKGTIDHIYLDKLNIHDVIGNVYDKHMNNGGIYFTVFNPKNEVQTGIARYN
DVKIENCIVNNVNRWGIAVGYTAYSNKFLNSEISDETIAKYGATGVKIRNNYVKDAGGDA
ITTMYCDRPIIEYNVSDGVAKQINPTDYSETSFGRVAAAIWPWKCKNAVFQYNEAFDTSP
NQDGQAWDADYGDGTIYQYNYSHNNGGGAVMVCGSQAINTVFRYNISENDLSGVLNLPGN
PTAHIYNNTFYMKEGIPFIRTGMTGGVAVVENNIIYNSGAAKAEDWTKGNTTVTYSNNLY
HNYTNLPTTDSKAITADPKFINPGNGPTKYTGKIPGSSEKITNNLSAYEGYKLRDDSQAI
NAGKVIENNGGFDFFGNKILGIPDIGAYESPITSAKLDDNAIKDSIYMINESSKTIYIPS
VDINKTTINEVLSGIVVHSTANMKIFNGDNQVQEGYISDEMKLKVIAENGNENVYVI

Enzyme Prediction     

EC	3.2.1.140

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH136	38	569	5.2e-165	0.9959266802443992

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	0.002	240	429	9	157	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QCT93619.1	9.53e-183	11	570	14	580
ARV05068.1	8.43e-181	21	570	20	579
QOL32965.1	8.16e-161	41	571	3	556
QOL34407.1	5.22e-159	41	571	3	556
ADO52688.1	2.84e-148	38	632	33	673

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	3.61e-185	32	570	2	577	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
5GQC_A	1.55e-146	38	572	17	599	Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
6KQT_A	1.65e-143	38	456	244	663	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
7V6I_A	1.68e-143	38	570	13	609	ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQS_A	1.98e-138	38	456	244	663	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000254	0.999105	0.000172	0.000167	0.000149	0.000137

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004230_03153.