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CAZyme Information: MGYG000004239_00308

You are here: Home > Sequence: MGYG000004239_00308

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella;
CAZyme ID MGYG000004239_00308
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
531 MGYG000004239_4|CGC2 57973.23 4.6138
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004239 1498755 MAG United Kingdom Europe
Gene Location Start: 66755;  End: 68350  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004239_00308.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 105 477 7.4e-66 0.9230769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.34e-93 82 462 84 466
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.02e-21 188 414 48 255
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 5.12e-21 73 417 60 363
polygalacturonase ADPG
PLN03010 PLN03010 1.61e-20 82 482 48 384
polygalacturonase
PLN03003 PLN03003 1.00e-19 174 428 97 318
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIA34431.1 0.0 1 531 1 531
ATP54717.1 0.0 1 531 1 531
QUC03565.1 2.01e-279 1 530 1 529
QOL31033.1 3.13e-235 1 528 1 526
QOL34309.1 6.29e-235 1 528 1 526

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 2.74e-38 65 380 11 335
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 7.31e-28 83 380 47 344
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 1.37e-25 74 422 150 514
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 6.75e-57 236 506 23 295
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 1.37e-33 85 523 67 481
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 1.64e-26 43 422 124 507
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P48978 1.30e-19 71 427 88 400
Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1
P49063 1.60e-18 81 408 70 353
Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000042 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004239_00308.