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CAZyme Information: MGYG000004250_02247

You are here: Home > Sequence: MGYG000004250_02247

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acetatifactor sp003447295
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor; Acetatifactor sp003447295
CAZyme ID MGYG000004250_02247
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
465 MGYG000004250_29|CGC1 52907.89 4.9509
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004250 3091301 MAG United Kingdom Europe
Gene Location Start: 23530;  End: 24927  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004250_02247.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 170 453 1e-42 0.84

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.00e-19 145 350 117 366
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 8.65e-08 150 392 76 315
polygalacturonase
PLN02218 PLN02218 3.92e-06 225 418 191 378
polygalacturonase ADPG
PLN02793 PLN02793 1.54e-05 170 299 117 252
Probable polygalacturonase
pfam00295 Glyco_hydro_28 3.40e-05 189 418 40 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJD84919.1 8.13e-116 14 444 35 469
QTH41144.1 1.07e-112 14 458 27 474
QNK57055.1 1.40e-110 19 444 30 459
AZS17007.1 5.11e-100 14 463 26 477
AWW32777.1 3.13e-67 32 448 34 479

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9SFB7 9.39e-07 190 303 140 272
Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2
Q8RY29 8.80e-06 189 418 169 378
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000047 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004250_02247.