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CAZyme Information: MGYG000004275_00955

You are here: Home > Sequence: MGYG000004275_00955

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp000437175
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp000437175
CAZyme ID MGYG000004275_00955
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1043 112993.75 4.6271
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004275 2279760 MAG China Asia
Gene Location Start: 7795;  End: 10926  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004275_00955.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 212 436 5.8e-32 0.9356435643564357
CBM13 558 704 3.5e-19 0.7021276595744681
CBM13 712 877 1.7e-18 0.8191489361702128

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.73e-31 160 510 17 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 5.01e-18 239 437 17 189
Amb_all domain.
pfam14200 RicinB_lectin_2 4.09e-16 643 742 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 4.92e-16 556 637 12 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 2.57e-14 597 686 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL17651.1 9.04e-160 1 699 1 687
CDM70399.1 2.52e-141 30 703 24 697
AUO18238.1 2.30e-137 33 686 31 692
CBL16867.1 1.46e-111 29 854 30 851
ASR46637.1 4.42e-68 19 525 20 536

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 6.99e-15 190 406 20 214
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
1VBL_A 2.04e-10 291 405 192 301
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 3.77e-24 173 516 35 342
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 6.86e-24 173 516 35 342
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 1.79e-16 171 516 8 309
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
Q9WYR4 2.05e-15 190 406 47 241
Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1
B1L969 6.45e-15 190 406 45 239
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000398 0.998846 0.000181 0.000221 0.000168 0.000150

TMHMM  Annotations      download full data without filtering help

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