CAZyme Information: MGYG000004281_01954

Basic Information

• Species: Parabacteroides sp900552465
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides sp900552465
• CAZyme ID: MGYG000004281_01954
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
996		110457.6	8.8948

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004281	4813571	MAG	China	Asia

• Gene Location: Start: 33628; End: 36618 Strand: +

Full Sequence      

MKKIYILLFSCVTFLSALAQTTPNLYRAADQAKMNHWVDSVFDAMSYDERIGQLFMVIAN
PKSDTRNMQRLMRYVNEVKIGGILFHKGDPVTQAEVTNRLQKASRVPMLVSLDGEWGLSM
RLSGTTRFPKNMMLGAIEDNSLITEYGKEVARQCKEMGIHINFAPDMDVNSNTDNPVIGL
RSFGENPNAVADKGLAYARGLEGQGIISVSKHFPGHGDTNEDSHYTLPAVHHDRARLDSV
ELLPFKRYIYDGYAGVMTGHLYVPALDKARNKPVSMSRAVVTDLLQKDLGFRGLCFTDAL
AMKGASTRKSDNPSVMALLAGNDILLAPAAPINDFAAVKEALEEGILDREEIEAKIIKIL
QYKYIAGLNNYRPIDTKGLSRRLNTPHAAWLAAKLNAEAITLMKNEGDIVPLKQLDKKKI
AALSIGDDTGNEFQQMLSRYDSVACFSIGRNATAQQVQNVYRKLEKYDVIICGVHTVRIP
ESLALRQLAGKKELVYAFFTLPYFCKEYKASILKAKAVVMAYEGTPLAQEYAAQVIFGGV
AAKGKLPVSIPTLYQAGTGIFTEKTRFGYHEPEEVGASPERLDVIASIVEEGLEQKAFPG
CQVLVAKDGMIIYDKSFGYFSYDGKQPVEENSVYDLASSSKAAGTLLAVMKAYDEKKFTL
NNKISDFVPELKDSDKKNLLIKELLYHQSGLTPTINFYLKAIDKDSYKGSLYSGAKNATH
PVRFDAKTYVRNDFSFLPDLVSNKKKPGFTTEVARGMYLHDSFKDTIIQEIKDSRLGVRG
KYKYSCINFILLKMMVEKQTGQPMDRLLHDQFFSRLGAWHTTYNPLNVMDTACIVPTEND
QFVRRQLLRGYVHDEAAAFQGGVSGNAGLFSNADDLAKVLQLYLNQGTYGGEQYLSPETA
RLFTQSKSPTCRRGLGFDKPAPGAGKGSPCGSLAPASVYGHTGFTGTCFWVDPDNNLLYI
FLSNRVNPTRANNKLSSLEIRTRIQDAIYKAINGGK

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	326	1.4e-54	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	1.47e-72	45	435	1	373	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	6.19e-69	48	360	3	314	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	4.05e-62	570	992	28	431	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	1.49e-45	585	970	1	313	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	6.57e-40	572	987	28	385	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT50763.1	0.0	1	992	1	992
QUT21701.1	0.0	1	993	1	992
QUT93956.1	0.0	1	993	1	992
AST55084.1	0.0	1	993	1	992
QCY58561.1	0.0	1	993	1	992

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	3.71e-65	1	561	1	628	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	4.46e-63	39	561	10	602	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	8.21e-63	39	561	40	632	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A	4.74e-62	44	550	10	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	2.44e-51	71	363	50	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.03e-64	1	561	1	628	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.84e-49	71	427	55	438	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	6.52e-43	572	992	30	431	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	1.34e-41	572	992	30	431	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q7WUL3	4.33e-39	37	412	18	398	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000716	0.996784	0.001863	0.000206	0.000201	0.000201

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004281_01954.