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CAZyme Information: MGYG000004287_00960
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Limosilactobacillus caviae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; Limosilactobacillus caviae | |||||||||||
| CAZyme ID | MGYG000004287_00960 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Peptidoglycan endopeptidase LytF | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 107146; End: 107784 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG0791 | Spr | 1.80e-24 | 91 | 201 | 66 | 183 | Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]. |
| pfam00877 | NLPC_P60 | 4.05e-22 | 112 | 208 | 1 | 96 | NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. |
| cd00118 | LysM | 3.78e-13 | 30 | 74 | 1 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| PRK13914 | PRK13914 | 2.71e-12 | 2 | 188 | 291 | 456 | invasion associated endopeptidase. |
| NF033741 | NlpC_p60_RipA | 1.05e-11 | 104 | 198 | 332 | 440 | NlpC/P60 family peptidoglycan endopeptidase RipA. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QQR14478.1 | 4.49e-144 | 1 | 212 | 1 | 212 |
| ANU51561.1 | 4.49e-144 | 1 | 212 | 1 | 212 |
| CUU12325.1 | 2.60e-143 | 1 | 212 | 1 | 212 |
| QDK48290.1 | 2.60e-143 | 1 | 212 | 1 | 212 |
| AGN98963.1 | 2.60e-143 | 1 | 212 | 1 | 212 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6B8C_A | 1.23e-22 | 104 | 211 | 32 | 142 | Crystalstructure of NlpC/p60 domain of peptidoglycan hydrolase SagA [Enterococcus faecium] |
| 7CFL_A | 1.61e-09 | 104 | 207 | 18 | 131 | ChainA, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_B Chain B, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_C Chain C, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_D Chain D, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile] |
| 3NE0_A | 9.35e-09 | 104 | 212 | 89 | 211 | Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv] |
| 3PBC_A | 9.35e-09 | 104 | 212 | 89 | 211 | ChainA, Invasion Protein [Mycobacterium tuberculosis] |
| 2XIV_A | 1.49e-07 | 104 | 212 | 84 | 206 | Structureof Rv1477, hypothetical invasion protein of Mycobacterium tuberculosis [Mycobacterium tuberculosis H37Rv] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P13692 | 1.17e-19 | 104 | 211 | 406 | 516 | Protein P54 OS=Enterococcus faecium OX=1352 PE=3 SV=2 |
| O07532 | 2.46e-16 | 31 | 207 | 308 | 481 | Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2 |
| O31852 | 9.90e-14 | 30 | 207 | 225 | 407 | D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1 |
| Q01835 | 1.21e-10 | 31 | 195 | 298 | 493 | Probable endopeptidase p60 OS=Listeria grayi OX=1641 GN=iap PE=3 SV=1 |
| P76190 | 4.10e-10 | 104 | 207 | 145 | 258 | Murein DD-endopeptidase MepH OS=Escherichia coli (strain K12) OX=83333 GN=mepH PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000339 | 0.998879 | 0.000185 | 0.000218 | 0.000192 | 0.000164 |