CAZyme Information: MGYG000004314_00831

Basic Information

• Species: Varibaculum timonense
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense
• CAZyme ID: MGYG000004314_00831
• CAZy Family: GH136
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1221		129845.46	5.5412

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004314	2027678	MAG	Israel	Asia

• Gene Location: Start: 31980; End: 35645 Strand: +

Full Sequence      

MNLKKLAKATGITVLATSLVALSQLPAVAAPVQAEIIPATTYYVSAAGNDANDGKSEAKP
LKTLEAVNQLTLHAGDKILLKRGDVFNNQHLCISGDKSFKFNDGTTCAYQADSDGAPLVI
SAYGEGDKPVIAANGQGQWKLDYGLTLGHSQHYLAKDAVSSTVMLKDTENIELSDLEITN
KRLEDGSGKENGCAYNDNCALDRTGIAGIAQNQGTLDHVVLKNLYVHDVKGNIYNKHSVN
GAIYFSSLIASDQMKPAAERKTPGFKPALDKPERGYPRFNDLQIINNRVENSGRWGIAAV
YSAYASVAVDGRIQIPDEVITKYGSTNVVISNNFIKNIGGDAITAMYGYKPVVESNVATE
IATQMNTTDYLFAKDTPGKFAKTGGRVAASIWPWKSKDAVFRFNEGFNTQNADKGNGDGM
PWDADSGDGTVYEYNYSANNSGGTVMFCGDQAANSTFRFNIAQNDSLGALSPTFWDGGYS
GKYPNAHVYNNTFYLKAGSSILHPAQAQQGTMKVENNIFYNMSDQARTESWNPLGHITWD
PKDIDGNAKVTYSHNLYYNYANYPASDQNPVKVSNKGSAVLADPGKAPSDAATDMKARPH
YFPGLSYAEADAKTTVFDGYKLAANSPAIGKGKEIVDDNGFALGTDFFGRTANTFDIGAV
STNQKPLPPATVTDSAKLVSTTYQVTDGQTVPSKNGVYKAGNTIHVPSTEKSPSSIAEVL
SNLTVEGKAQIVDASGNAQAEDALVAAGMKLKITSIDGKVTSEFPLSIDNVYSWLDDYTH
SVQGNVWFGQKQTGANGKWVNIDKVDPKYPNWQVDEYYGPGINGAQLTPTDRSALHGLLS
DSPTSAGATAMAWRAPKTGYITFKLKDAAAGKPAEPFLRQGDATGGTVTVKLLVNGSEKR
SLTLEKKEIRPNGEFNFTADDANALQVSKGDFVRVVAESTGNPAQPSMFVSPTITYIDRT
VDTEVIPVKPGTATGEPDTPTPGQNPQTDKGYVEGKVPGFSLSLTGNEVSGKVTLPQVEG
IEYLVNGAALADSYPAGPVVVTLKAKAGYKLGESATTEWKFTVPATPEFASDTGNLQIPT
TTGVSYDAQNQSVAPGKSVTVTATASDDYSFAATRAVKWTFTADQKDDPQPGTDPEKPGT
DPDKPGTDPEKPGTVPSDNPTRPDNGPVADGKQKNPNKPAAAVRQNRGSLVTTGSLAGIA
AIAALTLGAAGMAIVRRRARE

Enzyme Prediction     

No EC number prediction in MGYG000004314_00831.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH136	40	660	1.6e-135	0.9918533604887984

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	5.58e-04	280	363	9	92	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
PLN03209	PLN03209	0.001	922	1174	292	553	translocon at the inner envelope of chloroplast subunit 62; Provisional

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADO52688.1	3.59e-166	40	973	34	899
ADP35567.1	1.89e-165	40	1037	68	974
QTQ17888.1	3.21e-164	40	973	34	901
EFR49825.1	9.38e-164	40	973	21	886
BBA56588.1	2.16e-163	40	973	34	900

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	1.53e-164	35	659	4	574	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
5GQC_A	2.75e-128	40	660	18	595	Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
7V6I_A	2.34e-125	40	660	14	607	ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQT_A	3.00e-94	42	518	247	662	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A	2.34e-90	42	518	247	662	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000282	0.999028	0.000162	0.000193	0.000164	0.000150

TMHMM  Annotations     

start	end
1193	1215