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CAZyme Information: MGYG000004347_01119

You are here: Home > Sequence: MGYG000004347_01119

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA5884 sp900551505
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; UBA5884; UBA5884 sp900551505
CAZyme ID MGYG000004347_01119
CAZy Family CBM22
CAZyme Description Endo-1,4-beta-xylanase Y
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
642 70954.44 4.2357
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004347 1790191 MAG Israel Asia
Gene Location Start: 1220;  End: 3148  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 195 536 8.9e-97 0.9900990099009901
CBM22 32 159 5.1e-35 0.9694656488549618

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00331 Glyco_hydro_10 1.10e-106 195 536 1 310
Glycosyl hydrolase family 10.
smart00633 Glyco_10 1.15e-94 236 534 1 263
Glycosyl hydrolase family 10.
COG3693 XynA 4.76e-72 204 541 34 344
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
pfam02018 CBM_4_9 1.32e-22 32 161 4 132
Carbohydrate binding domain. This family includes diverse carbohydrate binding domains.
cd14256 Dockerin_I 5.43e-04 600 639 3 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16579.1 9.35e-162 5 548 7 546
CAB65753.1 1.43e-151 23 539 25 533
BCJ96140.1 8.27e-150 2 543 4 552
BAA21516.2 8.84e-150 23 544 27 551
ANV77297.1 8.84e-150 23 544 27 551

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2W5F_A 3.19e-109 26 538 19 528
ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2W5F_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus]
2WYS_A 2.11e-106 32 538 25 528
ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WYS_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_A Chain A, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus]
2UWF_A 8.67e-59 192 537 8 351
ChainA, ALKALINE ACTIVE ENDOXYLANASE [Halalkalibacterium halodurans]
6LPS_A 2.89e-57 192 536 9 351
ChainA, Beta-xylanase [Halalkalibacterium halodurans]
7CPK_A 3.67e-57 192 536 10 352
XylanaseR from Bacillus sp. TAR-1 [Bacillus sp. TAR1]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P51584 6.17e-105 3 538 2 539
Endo-1,4-beta-xylanase Y OS=Acetivibrio thermocellus OX=1515 GN=xynY PE=1 SV=1
P29126 4.58e-93 195 530 630 945
Bifunctional endo-1,4-beta-xylanase XylA OS=Ruminococcus flavefaciens OX=1265 GN=xynA PE=3 SV=1
Q60037 1.62e-91 24 535 198 690
Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1
Q60042 2.33e-84 24 535 193 686
Endo-1,4-beta-xylanase A OS=Thermotoga neapolitana OX=2337 GN=xynA PE=1 SV=1
O69230 5.68e-66 32 536 200 709
Endo-1,4-beta-xylanase C OS=Paenibacillus barcinonensis OX=198119 GN=xynC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000246 0.998999 0.000189 0.000203 0.000187 0.000160

TMHMM  Annotations      download full data without filtering help

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