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CAZyme Information: MGYG000004384_01307
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; | |||||||||||
| CAZyme ID | MGYG000004384_01307 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 832; End: 3702 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 267 | 448 | 3.8e-55 | 0.8923076923076924 |
| CBM13 | 537 | 656 | 1.3e-17 | 0.5797872340425532 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 6.38e-40 | 190 | 520 | 33 | 341 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam14200 | RicinB_lectin_2 | 4.41e-20 | 560 | 640 | 12 | 89 | Ricin-type beta-trefoil lectin domain-like. |
| smart00656 | Amb_all | 2.12e-18 | 263 | 455 | 10 | 190 | Amb_all domain. |
| pfam00544 | Pec_lyase_C | 1.53e-17 | 265 | 448 | 30 | 208 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| pfam14200 | RicinB_lectin_2 | 4.30e-17 | 601 | 689 | 5 | 89 | Ricin-type beta-trefoil lectin domain-like. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL16867.1 | 0.0 | 39 | 915 | 34 | 878 |
| CDM68184.1 | 6.08e-119 | 36 | 618 | 24 | 582 |
| AKQ74328.1 | 6.80e-91 | 39 | 521 | 29 | 479 |
| VEB20252.1 | 4.96e-90 | 39 | 534 | 29 | 493 |
| QII50179.1 | 4.96e-90 | 39 | 534 | 29 | 493 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3ZSC_A | 2.84e-11 | 203 | 445 | 14 | 226 | Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P94449 | 1.07e-55 | 190 | 521 | 35 | 337 | Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1 |
| O34819 | 1.62e-53 | 190 | 521 | 35 | 337 | Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1 |
| P27027 | 3.21e-48 | 190 | 521 | 10 | 304 | Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2 |
| P24112 | 4.96e-42 | 187 | 523 | 7 | 308 | Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1 |
| B1L969 | 1.41e-11 | 203 | 445 | 39 | 251 | Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000518 | 0.998059 | 0.000838 | 0.000232 | 0.000180 | 0.000148 |
