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CAZyme Information: MGYG000004402_00975

You are here: Home > Sequence: MGYG000004402_00975

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RC9 sp000432515
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp000432515
CAZyme ID MGYG000004402_00975
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
507 56110.69 5.1472
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004402 3046184 MAG Israel Asia
Gene Location Start: 62885;  End: 64408  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004402_00975.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 174 434 8.6e-30 0.6738461538461539

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.16e-16 199 361 203 370
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.19e-07 168 353 18 208
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 1.98e-05 236 301 167 234
polygalacturonase
pfam13229 Beta_helix 5.00e-05 233 361 7 123
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
PLN03003 PLN03003 1.24e-04 199 350 112 257
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SCM58771.1 9.34e-110 21 469 58 494
QRP58902.1 2.84e-106 25 472 311 759
QQA09745.1 2.84e-106 25 472 311 759
QQT79214.1 2.84e-106 25 472 311 759
ASW16403.1 2.84e-106 25 472 311 759

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 5.81e-06 235 358 199 320
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000512 0.998633 0.000308 0.000183 0.000164 0.000159

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004402_00975.