CAZyme Information: MGYG000004445_01023

Basic Information

• Lineage: Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae
• CAZyme ID: MGYG000004445_01023
• CAZy Family: GH28
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1297	MGYG000004445_19|CGC1	142015.9	4.6176

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004445	2176712	MAG	Israel	Asia

• Gene Location: Start: 30006; End: 33899 Strand: +

Full Sequence      

MRINKCAAIGKRKKATAIFFLLAVLATACFGSIFLKASAADVFAGWSTSGWTISEEGGVA
VLLGNSLASLNVLSSDEKVNADGISFDVYIDSVSGGNDGNIGAAYRCTSGYQYFFEYNAI
SKTAKIRRIGENGTDVTVSETVSCSLSEKKWYSMRMTFAKDDLKWYLNGKEILSSSNTYD
DTFSMGSCYIQGYFVCPKLKNVKIERTEGSALNDREFDFEFTSPSSVTPFRAEKGEVSYE
NGCLKYTLKGENGALISPELYVACGNRYSARISIRNTVFVRMRNATSASAMKVYFRTNET
ETFTEELSRTFDLVKDDADFTSYYFNLSALTGSKGYITELKFVPVGAESGEIDIDAITFE
REKEFYDYAGTVESCTADDSVVTIRGTLTDRYAGKSVKIYEIYPENYTESTEGLTPVARV
RSNGNTFTATLPFRKGNITRLSSLFLAVVSGEEGNVKIADRFSIENYRDFTENPYEFSLP
SLTVDVTSPEFGAKGDAFTNDNAAIQKAVDYVSSKGGGKVVIPGDDSYYGRRYVATNIKM
RNNVELHIEKGAVIWQSPRTEDYDYDVAIGHDVYIPGVNWTTACSCHNLPLIQGDSVKNV
KITGEGTLRCVDTGGDNLDTLSGVSIWRGCAGRIHIIPIGFWNCENVEIRDITLRRTNNY
HVNMRTCRNIYIANVTLREVTCAGGDGFSATVGTKNMILDRCFCFINDDAVTICSTYNDP
RGQVSPWWSPNPGGDNCIDNLVVKHCNFYGGHGITFITWGTDAPDLSLQEIKNVEVYDCA
LNGTAGSVGSWADNPYYGGEYDGSEVDDYSPVKQVRIHDNEYRGKATIDSIKATDFISDC
GIRSAGDFRNGTFDREGGKGGWISGFSNWSCEGENAKFSVVRGDDGYAGKISGEGKLWQG
LYLGTGEHTFSVDIKVLSGKAKLFATDAVTGETIAEKTAEQNGRNTLTFSLTTGRTLWIG
VEQTEEGDVLIDNASVGGEAPVYARYFEETFETLDAVTFDYSAWELSEENGNRYISMLSG
GGTGFTDFGYDYAAADVRFNIRITNVVSSLDGNVSIAFARLDSDTQYYLEYNTVGKYARI
RKFDRGASAVLQTTSLSLEKNVWYTFGLRFGNGGYEFYVDGEKIFSGTDDSPLAEGKLMI
VTYNTAIDLDNVTVGEYETVNVNEKTSVVPEKKKYVLSFDVGGGDVQPAAQELASGDKPT
EIPVPAKKGYIFEGWKTDDGENYDPSSFVMPARNVKLTAVWRKADGESEDVSQSGSSSPD
GSASGKGCKGGANGVAGLSLLAAVGFALAERRKRYDR

Enzyme Prediction     

No EC number prediction in MGYG000004445_01023.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	536	786	1.3e-21	0.5907692307692308

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG5434	Pgu1	4.52e-21	478	784	76	369	Polygalacturonase [Carbohydrate transport and metabolism].
pfam09479	Flg_new	3.00e-10	1175	1240	1	65	Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.
pfam00295	Glyco_hydro_28	1.01e-04	592	788	48	214	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam12708	Pectate_lyase_3	0.005	484	521	2	37	Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGA23464.1	6.38e-169	221	925	71	752
QCD41820.1	2.04e-108	215	924	196	884
QGQ94767.1	7.11e-41	481	981	34	533
ADB48560.1	2.77e-38	481	953	25	486
ADB48561.1	1.93e-37	481	936	25	460

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4MXN_A	1.31e-12	491	691	27	210	Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
3JUR_A	5.47e-07	490	715	32	267	Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.007076	0.292615	0.698942	0.000638	0.000364	0.000349

TMHMM  Annotations     

start	end
17	35