You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000004464_00569
You are here: Home > Sequence: MGYG000004464_00569
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Barnesiella sp900542255 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella; Barnesiella sp900542255 | |||||||||||
| CAZyme ID | MGYG000004464_00569 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 1928; End: 4435 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 168 | 353 | 2.8e-41 | 0.8465346534653465 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| smart00656 | Amb_all | 6.23e-30 | 198 | 352 | 34 | 186 | Amb_all domain. |
| COG3866 | PelB | 7.68e-28 | 34 | 414 | 19 | 342 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam00544 | Pec_lyase_C | 1.89e-15 | 192 | 352 | 48 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| pfam13205 | Big_5 | 4.35e-05 | 664 | 763 | 12 | 106 | Bacterial Ig-like domain. |
| pfam12733 | Cadherin-like | 0.002 | 450 | 507 | 14 | 85 | Cadherin-like beta sandwich domain. This domain is found in several bacterial, metazoan and chlorophyte algal proteins. A profile-profile comparison recovered the cadherin domain and a comparison of the predicted structure of this domain with the crystal structure of the cadherin showed a congruent seven stranded secondary structure. The domain is widespread in bacteria and seen in the firmicutes, actinobacteria, certain proteobacteria, bacteroides and chlamydiae with an expansion in Clostridium. In contrast, it is limited in its distribution in eukaryotes suggesting that it was derived through lateral transfer from bacteria. In prokaryotes, this domain is widely fused to other domains such as FNIII (Fibronectin Type III), TIG, SLH (S-layer homology), discoidin, cell-wall-binding repeat domain and alpha-amylase-like glycohydrolases. These associations are suggestive of a carbohydrate-binding function for this cadherin-like domain. In animal proteins it is associated with an ATP-grasp domain. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AAW84045.1 | 1.82e-129 | 85 | 422 | 1 | 331 |
| QVJ81552.1 | 6.62e-112 | 49 | 415 | 48 | 421 |
| ADE83376.1 | 1.31e-111 | 49 | 415 | 48 | 421 |
| ABG58437.1 | 4.66e-40 | 126 | 672 | 34 | 604 |
| AHJ96631.1 | 1.01e-36 | 141 | 415 | 79 | 364 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1VBL_A | 9.96e-16 | 194 | 403 | 146 | 361 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
| 1PXZ_A | 2.44e-13 | 199 | 354 | 122 | 270 | ChainA, Major pollen allergen Jun a 1 [Juniperus ashei],1PXZ_B Chain B, Major pollen allergen Jun a 1 [Juniperus ashei] |
| 3ZSC_A | 1.78e-11 | 172 | 329 | 63 | 214 | Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
| 5AMV_A | 6.92e-08 | 204 | 331 | 150 | 298 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 1BN8_A | 7.35e-08 | 204 | 331 | 171 | 319 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A2QV36 | 3.11e-22 | 204 | 416 | 118 | 322 | Probable pectate lyase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=plyA PE=3 SV=1 |
| Q9C2Z0 | 3.11e-22 | 204 | 416 | 118 | 322 | Pectate lyase A OS=Aspergillus niger OX=5061 GN=plyA PE=1 SV=1 |
| A1CYB8 | 2.69e-20 | 205 | 415 | 117 | 319 | Probable pectate lyase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyA PE=3 SV=1 |
| Q5AVN4 | 7.86e-19 | 187 | 416 | 106 | 326 | Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1 |
| B8NE46 | 2.36e-18 | 204 | 416 | 116 | 320 | Probable pectate lyase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.008113 | 0.968212 | 0.022606 | 0.000476 | 0.000292 | 0.000276 |