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CAZyme Information: MGYG000004464_01424

You are here: Home > Sequence: MGYG000004464_01424

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Barnesiella sp900542255
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella; Barnesiella sp900542255
CAZyme ID MGYG000004464_01424
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1221 MGYG000004464_20|CGC1 133118.25 4.3752
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004464 2487387 MAG Israel Asia
Gene Location Start: 6520;  End: 10185  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004464_01424.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 229 419 6.8e-45 0.9356435643564357

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 6.21e-48 205 535 62 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 9.06e-31 256 419 19 190
Amb_all domain.
pfam00544 Pec_lyase_C 6.97e-21 219 415 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
NF033189 internalin_A 2.54e-06 905 1090 563 756
class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.
pfam02368 Big_2 5.24e-06 845 884 27 66
Bacterial Ig-like domain (group 2). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT73893.1 1.64e-173 39 576 8 541
QCD40816.1 6.07e-172 57 576 69 587
QCP73706.1 6.07e-172 57 576 69 587
BCJ94010.1 2.01e-159 55 576 41 564
AIQ71967.1 3.42e-157 55 576 34 557

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.18e-20 219 465 47 297
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1PCL_A 1.68e-16 214 419 42 280
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1VBL_A 5.34e-16 256 415 135 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A 7.09e-16 219 428 51 270
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 1.70e-15 219 428 51 270
ChainA, Pectate lyase C [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8GCB2 4.73e-23 196 424 61 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 4.73e-23 196 424 61 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1 4.73e-23 196 424 61 281
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q60140 4.54e-19 200 415 60 310
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
P0C1C3 5.65e-19 148 430 22 293
Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.587595 0.259308 0.149778 0.001846 0.000843 0.000616

TMHMM  Annotations      download full data without filtering help

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39 58