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CAZyme Information: MGYG000004464_02068

You are here: Home > Sequence: MGYG000004464_02068

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Barnesiella sp900542255
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella; Barnesiella sp900542255
CAZyme ID MGYG000004464_02068
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
873 94942.96 4.5395
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004464 2487387 MAG Israel Asia
Gene Location Start: 2735;  End: 5356  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004464_02068.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 76 261 8.3e-81 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.63e-10 21 261 26 273
Pectate lyase [Carbohydrate transport and metabolism].
pfam16318 DUF4957 1.10e-08 525 660 7 140
Domain of unknown function (DUF4957). This family consists of uncharacterized proteins around 150 residues in length and is mainly found in various Bacteroides and Prevotella species. The function of this protein is unknown.
pfam18884 TSP3_bac 3.97e-04 438 459 1 22
Bacterial TSP3 repeat. This entry contains a novel bacterial thrombospondin type 3 repeat which differs from the typical consensus by containing a glutamate in place of one of the calcium binding aspartate residues.
TIGR04183 Por_Secre_tail 0.001 827 871 25 69
Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
smart00656 Amb_all 0.004 74 261 1 186
Amb_all domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT75603.1 7.27e-221 24 860 16 888
QUT77823.1 5.05e-212 25 488 53 522
QDO69223.1 1.87e-194 25 481 45 511
QUT93111.1 2.65e-194 25 481 45 511
ALJ61309.1 4.31e-194 25 481 49 515

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8NQQ7 6.28e-56 19 481 16 414
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q2UB83 7.22e-54 19 481 16 414
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
Q4WL88 1.26e-52 25 481 23 415
Probable pectate lyase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyC PE=3 SV=1
B0XMA2 1.73e-52 25 481 23 415
Probable pectate lyase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyC PE=3 SV=1
A1DPF0 1.90e-50 25 481 23 415
Probable pectate lyase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000236 0.999046 0.000215 0.000165 0.000152 0.000133

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004464_02068.