CAZyme Information: MGYG000004479_00237

Basic Information

• Species: Phocaeicola mediterraneensis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola mediterraneensis
• CAZyme ID: MGYG000004479_00237
• CAZy Family: GH51
• CAZyme Description: Intracellular exo-alpha-L-arabinofuranosidase 2

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
512	MGYG000004479_2|CGC4	58235.35	6.7165

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004479	3712458	MAG	Israel	Asia

• Gene Location: Start: 129668; End: 131206 Strand: +

Full Sequence      

MKNAILGLALFAAMPLFAQQKATVTVHPEQGKQIINKEIYGQFAEHLGTCIYGGLWVGED
SPIPNINGYRKDVFEALKALKVPVLRWPGGCFADEYHWMDGIGPREKRPRMVNNNWGGTV
EDNSFGTHEFLNLCEMLGCEPYISGNVGSGSVEEMAKWVEYMTSEQGSPMAKLRKENGRE
KPWKVKYFGVGNESWGCGGSMRPEYYSDLYRRYSTYCRNYDGNRLFKIASGASDYDYNWT
EVLMKNIGHRMDGISLHYYTVLGWNGSKGSATKFNDEDYYWTVGKCREIEDVLKRHIAIM
DKYDPKKQIGLMVDEWGTWWDEEPGTISGHLYQQNTLRDAFVASLSLDIFHKYTDRVKMT
NIAQVVNVLQSMILTKDDKMVLTPTYYVFQMYNVHQDATYLPLDLQCERKIVRDDRIVPM
VSATASRDKAGAIHVSLSNIDLKESQDITLTLGDVKAKSVTGRILTSDNIDDYNTFEQPD
KVRLADFKGAKLTKNGLEIKLPAKSIVTLEIK

Enzyme Prediction     

EC	3.2.1.55

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH51	20	512	1.1e-145	0.7301587301587301

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3534	AbfA	0.0	21	512	3	499	Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].
pfam06964	Alpha-L-AF_C	2.07e-79	314	505	1	192	Alpha-L-arabinofuranosidase C-terminal domain. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
smart00813	Alpha-L-AF_C	1.04e-66	314	505	1	189	Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ALK86132.1	0.0	1	512	1	512
ABR41656.1	0.0	1	512	1	512
AII70091.1	0.0	1	512	1	512
AII64410.1	0.0	1	512	1	512
ALA75809.1	0.0	1	512	1	512

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6ZT6_A	1.61e-209	24	511	7	493	ChainA, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT6_B Chain B, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT6_C Chain C, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT7_A Chain A, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT7_B Chain B, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT7_C Chain C, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus]
2VRQ_A	1.61e-209	24	511	7	493	StructureOf An Inactive Mutant Of Arabinofuranosidase From Thermobacillus Xylanilyticus In Complex With A Pentasaccharide [Thermobacillus xylanilyticus],2VRQ_B Structure Of An Inactive Mutant Of Arabinofuranosidase From Thermobacillus Xylanilyticus In Complex With A Pentasaccharide [Thermobacillus xylanilyticus],2VRQ_C Structure Of An Inactive Mutant Of Arabinofuranosidase From Thermobacillus Xylanilyticus In Complex With A Pentasaccharide [Thermobacillus xylanilyticus]
6ZT8_A	6.52e-209	24	511	7	493	ChainA, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT8_B Chain B, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT8_C Chain C, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT9_A Chain A, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT9_B Chain B, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZT9_C Chain C, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus]
6ZTA_A	1.51e-207	24	511	7	493	ChainA, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZTA_B Chain B, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus],6ZTA_C Chain C, Alpha-L-arabinofuranosidase [Thermobacillus xylanilyticus]
2VRK_A	8.29e-200	24	511	7	493	Structureof a seleno-methionyl derivative of wild type arabinofuranosidase from Thermobacillus xylanilyticus [Thermobacillus xylanilyticus],2VRK_B Structure of a seleno-methionyl derivative of wild type arabinofuranosidase from Thermobacillus xylanilyticus [Thermobacillus xylanilyticus],2VRK_C Structure of a seleno-methionyl derivative of wild type arabinofuranosidase from Thermobacillus xylanilyticus [Thermobacillus xylanilyticus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q59219	2.57e-309	10	512	12	514	Intracellular exo-alpha-L-arabinofuranosidase OS=Bacteroides ovatus OX=28116 GN=asdII PE=3 SV=1
P94552	1.64e-201	26	512	8	492	Intracellular exo-alpha-L-arabinofuranosidase 2 OS=Bacillus subtilis (strain 168) OX=224308 GN=abf2 PE=1 SV=2
A2QQ94	2.91e-63	19	470	10	471	Probable alpha-L-arabinofuranosidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=abfC PE=3 SV=1
B8NIX4	1.51e-62	19	470	10	471	Probable alpha-L-arabinofuranosidase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=abfC PE=3 SV=1
Q5BDV3	2.95e-62	16	462	7	463	Alpha-L-arabinofuranosidase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=abfC PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000268	0.999047	0.000198	0.000157	0.000150	0.000144

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004479_00237.