CAZyme Information: MGYG000004499_01356

Basic Information

• Species: Victivallis sp900551245
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900551245
• CAZyme ID: MGYG000004499_01356
• CAZy Family: CBM9
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1355		152449.38	8.8953

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004499	4071424	MAG	Israel	Asia

• Gene Location: Start: 21919; End: 25986 Strand: +

Full Sequence      

MNLKYLLLITLLCSQSAMFARGNAVDNGSFETFSGDGVPVKWHLQINRNAAVTVTPTTPG
YEGEKCIRVISRLRNKQPHVFGMLSQTVKIRPNTEYLLEFAVRGSNVNNVTWALGKGWMI
RCPIANVTEEWQERSFSFKLTQEQLEGANSCGLRLIVEGPCNELDIDHVRLTHKPKAIVT
NGSFDGKPGALPPGWSFRTSGNAKATATVDASVKFAGKTSLHFINQTPRNANVYGALSQT
VKLSPNIDYVMRVQAKGEGSGVNIAVGHKWFHRLNISNLTQTWKGYELTFRLNADEVDSN
GNAPVVIITENVTPGIWLDELTITPRENWKIPASLWQKNRLMQVYALHEDFNTLQSIPTG
VPIIKLPLSKENTTGNMPDAKDFSAEAALLYDSQGLILLVQVTDDIARPGRGENMWKNDS
IQIRFDRNALRHSSPNESDLEIGFSVDESGKVHSWCWDAGNDSFSGQKLPFELVQSHGSR
TSGHYFLAARLNWKLLGKLYRNKRFGFSIVANDSDAPSHRSVYFLTPGVHDSKYSDQYIQ
ALLYTGTPVFWAAVSQQQTAENLTGTILLSHTNGDVRFSVKFTDSTGKKSNHVIATIADV
KQSELIRLPFTLPINKLAQGPYQIEFLVNDEKVEHFTAVKANFHRAQQESVGKLYEKLQH
LKKAAQKFYGQRTPSAYISVPLDILSRHLTLLYNHLLTAQSDGEKRHYAQQAAMTQKDTA
DALADLTRRIEQLQSGDSLPSTWKFCSAPISLQNGWPIGTVLNEMGEKIRRPVIFCGYGH
FNDIDRDIADFQLQGVNIVQVEIGPRALFPREGKSAEFEPDYSIVNNRLLPLMKKAYENN
VKITLLISPHYHPAWLLKKYPDLVSSSGFIKYEVTHPKAEEMLQAYINALIGYLKKSPYA
DALHSLCISNEPVNTGCSPTNPYSVKAFQKYMEIKYGPVTAFNAIAGRKFCSYEDVAAST
LKDIAARYEFYSFSRESFANWHGMLAKTIRKIWPGIPVHSKIMVFSSPFEYVSGIDPELM
AEFSDYNGNDNYFYQRGRYLADWNVTAMTHEMQISAKPVSIANTENHIIPDREKRPVSND
HIYTALFQQFITGASTLVTWVWANFDYNATVQNPRADFIGNIRQRPGNIVAHALAEIDGL
RLAPELRKFFDYKPEAAILYSPTSLICSPDMYKAQVTELYTQLCFTGYRIRFLSERQLAR
REFGNVKLLYAVGAKHISRNSIAGLKDFLSAGGHIIADSKSLTRDQFDNPISQRFSTETI
EPESFTPTRLLKQLHKYIAPLPVSHSEISDGIFFRSVPDGDGNWLVNLVNYNVTSRDIVL
KGHGNWFDLLKDHPSSSRLKLIPLKPQLLRFSPDK

Enzyme Prediction     

No EC number prediction in MGYG000004499_01356.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH167	770	1350	6e-125	0.8340306834030683
CBM9	379	521	5.7e-17	0.7362637362637363

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	5.68e-25	381	543	26	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
pfam02449	Glyco_hydro_42	3.45e-11	782	1036	10	266	Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
pfam06452	CBM9_1	3.63e-11	366	515	15	151	Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.
cd09619	CBM9_like_4	1.58e-10	378	522	31	168	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	4.69e-09	378	520	13	153	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM43323.1	0.0	20	1353	22	1358
AVM46829.1	6.70e-241	179	1353	24	1182
AVM43886.1	9.11e-127	584	1351	232	998
AHF94331.1	7.09e-93	23	1351	28	1388
QGQ94885.1	1.83e-86	348	1315	647	1606

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q09HN2	4.16e-06	785	1057	27	299	Beta-galactosidase BgaP OS=Planococcus sp. (strain L4) OX=377621 GN=bgaP PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000240	0.999169	0.000153	0.000165	0.000143	0.000135

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004499_01356.