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CAZyme Information: MGYG000004499_02003
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Victivallis sp900551245 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900551245 | |||||||||||
| CAZyme ID | MGYG000004499_02003 | |||||||||||
| CAZy Family | GH78 | |||||||||||
| CAZyme Description | Biotin synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 35730; End: 38831 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH78 | 548 | 1004 | 2.7e-73 | 0.9345238095238095 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK07094 | PRK07094 | 1.91e-153 | 16 | 348 | 1 | 323 | biotin synthase; Provisional |
| TIGR03956 | rSAM_HydE | 1.47e-119 | 6 | 354 | 1 | 340 | [FeFe] hydrogenase H-cluster radical SAM maturase HydE. This model describes the radical SAM protein HydE, one of a pair of radical SAM proteins, along with GTP-binding protein HydF, for maturation of [Fe] hydrogenase in Chlamydomonas reinhardtii and numerous bacteria. [Protein fate, Protein modification and repair] |
| COG0502 | BioB | 5.52e-52 | 1 | 333 | 1 | 314 | Biotin synthase or related enzyme [Coenzyme transport and metabolism]. |
| smart00729 | Elp3 | 5.60e-26 | 55 | 259 | 2 | 213 | Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| PRK06256 | PRK06256 | 1.40e-24 | 1 | 304 | 5 | 299 | biotin synthase; Validated |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AVM44883.1 | 1.87e-217 | 367 | 1000 | 1 | 623 |
| BCG53178.1 | 1.76e-128 | 362 | 1014 | 39 | 702 |
| QTX05357.1 | 8.84e-82 | 391 | 1014 | 34 | 659 |
| SDT18190.1 | 3.57e-74 | 399 | 1014 | 38 | 671 |
| ANF32625.1 | 1.44e-69 | 399 | 1015 | 3 | 576 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7O1O_A | 1.14e-77 | 36 | 357 | 45 | 355 | ChainA [FeFe] hydrogenase maturase subunit HydE [Thermotoga maritima MSB8] |
| 5FEW_A | 1.17e-77 | 36 | 357 | 45 | 355 | HydEfrom T. maritima in complex with S-adenosyl-L-cysteine (final product) [Thermotoga maritima],5FEZ_A HydE from T. maritima in complex with (2R,4R)-MeSeTDA, 5'-deoxyadenosine and methionine [Thermotoga maritima],5FF0_A HydE from T. maritima in complex with S-adenosyl-L-cysteine and methionine [Thermotoga maritima],5FF4_A HydE from T. maritima in complex with (2R,4R)-TMeTDA [Thermotoga maritima],7O1T_A Chain A [FeFe] hydrogenase maturase subunit HydE [Thermotoga maritima],7O25_A Chain A [FeFe] hydrogenase maturase subunit HydE [Thermotoga maritima] |
| 7O1P_A | 4.24e-77 | 36 | 357 | 34 | 344 | ChainA [FeFe] hydrogenase maturase subunit HydE [Thermotoga maritima MSB8] |
| 5FEP_A | 4.29e-77 | 36 | 357 | 45 | 355 | HydEfrom T. maritima in complex with (2R,4R)-MeTDA [Thermotoga maritima],5FES_A HydE from T. maritima in complex with (2R,4R)-MeSeTDA [Thermotoga maritima],5FEX_A HydE from T. maritima in complex with Se-adenosyl-L-selenocysteine (tfinal of the reaction) [Thermotoga maritima] |
| 4JY9_A | 4.37e-77 | 36 | 357 | 35 | 345 | X-raysnapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters [Thermotoga maritima MSB8],5FF2_A HydE from T. maritima in complex with (2R,4R)-TDA [Thermotoga maritima MSB8],7O1S_A Chain A [FeFe] hydrogenase maturase subunit HydE [Thermotoga maritima MSB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q9X0Z6 | 2.40e-76 | 36 | 357 | 35 | 345 | [FeFe] hydrogenase maturase subunit HydE OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_1269 PE=1 SV=1 |
| Q8TUB9 | 6.73e-25 | 8 | 336 | 15 | 332 | 3-methylornithine synthase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=pylB PE=1 SV=1 |
| Q46E78 | 3.57e-22 | 8 | 336 | 15 | 332 | 3-methylornithine synthase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) OX=269797 GN=pylB PE=1 SV=1 |
| Q72L21 | 3.18e-15 | 16 | 328 | 16 | 314 | Biotin synthase OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=bioB PE=3 SV=1 |
| Q5SKN6 | 3.18e-15 | 16 | 328 | 16 | 314 | Biotin synthase OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=bioB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000072 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |