dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000004513_00583

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Basic Information help

Species

Victivallis sp900550905

Lineage

Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900550905

CAZyme ID

MGYG000004513_00583

CAZy Family

GH39

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
621		69479.62	8.283

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004513	4294613	MAG	Israel	Asia

Gene Location

Start: 30089; End: 31954 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000004513_00583.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH39	104	249	1.8e-23	0.3874709976798144

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam02449	Glyco_hydro_42	4.45e-07	38	111	10	82	Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
COG1874	GanA	5.20e-07	26	210	18	229	Beta-galactosidase GanA [Carbohydrate transport and metabolism].
pfam11790	Glyco_hydro_cc	1.18e-05	128	246	64	174	Glycosyl hydrolase catalytic core. This family is probably a glycosyl hydrolase, and is conserved in fungi and some Proteobacteria. The pombe member is annotated as being from IPR013781.
PRK15014	PRK15014	6.04e-05	41	146	72	188	6-phospho-beta-glucosidase BglA; Provisional
cd21510	agarase_cat	4.09e-04	95	253	61	242	alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM44885.1	2.50e-152	4	620	3	619
QDU57372.1	8.85e-70	24	618	28	631
AOD20726.1	6.89e-31	39	250	55	286
QXU53077.1	1.74e-30	39	250	55	286
QQM52578.1	1.74e-30	39	250	55	286

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4ZN2_A	6.72e-09	48	244	43	254	Glycosylhydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_B Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_C Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_D Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
5BX9_A	6.72e-09	48	244	43	254	Structureof PslG from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],5BXA_A Structure of PslG from Pseudomonas aeruginosa in complex with mannose [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000315	0.998584	0.000620	0.000155	0.000152	0.000151

TMHMM Annotations help

There is no transmembrane helices in MGYG000004513_00583.