dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000004513_01058

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Basic Information help

Species

Victivallis sp900550905

Lineage

Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900550905

CAZyme ID

MGYG000004513_01058

CAZy Family

GH39

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1149		128730.92	9.3172

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004513	4294613	MAG	Israel	Asia

Gene Location

Start: 6012; End: 9461 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000004513_01058.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH39	501	785	3e-17	0.7215777262180975

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	2.79e-41	960	1145	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
COG3693	XynA	2.38e-05	491	607	69	187	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
cd09619	CBM9_like_4	3.62e-05	984	1119	29	165	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
pfam00331	Glyco_hydro_10	0.001	471	578	24	128	Glycosyl hydrolase family 10.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM47149.1	1.21e-162	111	1146	261	1307
AVM46276.1	4.74e-145	106	1146	87	1137
AVM44759.1	3.54e-141	187	1146	10	965
AHF94342.1	4.41e-129	327	1147	208	1034
AVM45104.1	1.01e-114	99	1144	72	1133

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	1.82e-09	466	829	116	493	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.078641	0.919461	0.000950	0.000312	0.000290	0.000312

TMHMM Annotations download full data without filtering help

start	end
7	29