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CAZyme Information: MGYG000004513_02590

You are here: Home > Sequence: MGYG000004513_02590

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Victivallis sp900550905
Lineage Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900550905
CAZyme ID MGYG000004513_02590
CAZy Family GH50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
668 76674.05 9.2846
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004513 4294613 MAG Israel Asia
Gene Location Start: 4195;  End: 6201  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004513_02590.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH50 24 491 2.9e-71 0.7702909647779479

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam04994 TfoX_C 8.61e-04 579 624 34 81
TfoX C-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in Neisseria meningitidis TadA. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM46385.1 0.0 1 668 1 669
QRO01254.1 5.42e-99 22 501 215 699
BBI31951.1 9.44e-81 11 495 594 1100
QBG46742.1 8.18e-52 24 498 231 749
QZX85855.1 2.87e-50 24 493 194 699

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6XJ9_A 2.48e-37 24 491 223 758
Structureof PfGH50B [Pseudoalteromonas fuliginea],6XJ9_B Structure of PfGH50B [Pseudoalteromonas fuliginea]
4BQ2_A 1.34e-36 24 497 204 748
Structuralanalysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ2_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ2_C Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ2_D Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_A Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_C Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_D Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40]
4BQ4_A 3.22e-36 24 497 204 748
Structuralanalysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ4_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ5_A Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ5_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40]
5Z6P_A 6.24e-34 24 491 223 758
Thecrystal structure of an agarase, AgWH50C [Agarivorans gilvus],5Z6P_B The crystal structure of an agarase, AgWH50C [Agarivorans gilvus]
5T3B_A 1.51e-12 67 480 84 461
ChainA, Glycoside Hydrolase [Phocaeicola plebeius],5T3B_B Chain B, Glycoside Hydrolase [Phocaeicola plebeius]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P48840 2.15e-36 24 488 432 945
Beta-agarase B OS=Vibrio sp. (strain JT0107) OX=47913 GN=agaB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000290 0.999046 0.000190 0.000164 0.000145 0.000140

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004513_02590.