CAZyme Information: MGYG000004548_01170

Basic Information

• Species: AM51-8 sp900546435
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; AM51-8; AM51-8 sp900546435
• CAZyme ID: MGYG000004548_01170
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
862	MGYG000004548_16|CGC1	98211.33	5.7084

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004548	2412445	MAG	France	Europe

• Gene Location: Start: 20323; End: 22911 Strand: -

Full Sequence      

MMKATNLKVEYLTNPIGIDVVRPRFSWTFEKGTKQTAYQIVAKDDLGNLLWDSGKVASDQ
MHLVAWGADDLKSRTHVTWCVTVWDEKDEAETSENAWFEIGLLQKQDWTAKWITGDYVPK
KKERYPVDCFKKTFAIASDKKVKKARAYMSACGVYEGRINGEKIGEFILAPGITDYRKRV
QYQTVDVTALLAAGDNQLSFMLGDGWYRGSIGAWGMKNYYGSETKLLAQLEITYEDGSVD
VIATDERFDWTNDGPIRFADNKDGEIYDARMQDFLHAQWKKAKVTEHPVVPTASDNFILK
EHEVFSNPKLITTPAGKTVLDFGQNLAGIVAFSVNAKAGQRLYLRMGELIKNGEFTQKNI
QCVKKDMITPLQEITYFCKDGKNDYKTTFAIFGFQYIEVEADMEIHPEDFKAIAVYSGFE
TTFTFDSSNALLNQFVKNTLWSLKNNSADLPTDCPTRERHGWTGDAQLFVNTASYMVNYV
PFALKYERDLCDWQTKNGNFPQIAPEGGTDFYMRPMNGSVGWSDAGILIPYRLWKKYGDQ
QIIETYYEPMRRYAKYMISRTGKTEPMISVRTKLSKADKKYLYNFGQHYGEWAEPADVHK
MDWKDFATSRPEEATAYLSYVMNIMVEIAETLGHTEDIPLFEEYRDGAKNTYRKLMQQPA
FSLDTDRQARLVRPLYFDLLDEKDTALAKKRLIQALDNYHWRVGTGFLSTPFILYVLAEI
DPKYAYRLLENEEKPGWLCMPKAGATTIWEDWEGPNSDNGKGGGIASLNHYSKGAVCEWV
FDEMCGIKMAGQNHFVIAPLPGGHFSHAGMTYDSVYGKVGCFWKKNEDGTYAYHITIPAN
TSATVRLLGCEEQVLSAGEYDL

Enzyme Prediction     

No EC number prediction in MGYG000004548_01170.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	312	847	9.1e-129	0.9940476190476191
CBM67	110	284	6.8e-26	0.9431818181818182

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	7.16e-79	420	781	1	337	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531	Bac_rhamnosid_N	1.55e-51	140	289	1	157	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592	Bac_rhamnosid	1.44e-15	311	416	1	102	Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390	Bac_rhamnosid_C	4.55e-14	790	849	7	65	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QFJ55302.1	0.0	2	862	1	863
AHF25263.1	0.0	2	858	1	840
QUC03017.1	4.21e-312	2	860	1	878
ADP81465.1	5.11e-274	2	861	1	859
AWI66986.1	6.61e-259	1	861	6	858

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6I60_A	2.02e-108	2	847	24	898	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]
3W5M_A	2.38e-101	2	845	4	992	CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A	6.67e-96	2	849	2	848	Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KNB2	1.27e-114	1	847	32	878	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03	7.03e-105	3	843	30	874	Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
Q82PP4	1.05e-100	2	845	4	992	Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KPL4	1.34e-71	13	855	41	914	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000079	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004548_01170.