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CAZyme Information: MGYG000004569_01182

You are here: Home > Sequence: MGYG000004569_01182

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RF16 sp900556095
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; RF16; RF16 sp900556095
CAZyme ID MGYG000004569_01182
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
471 MGYG000004569_14|CGC1 50879.77 5.8903
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004569 2389314 MAG France Europe
Gene Location Start: 19987;  End: 21402  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004569_01182.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 88 277 2.6e-80 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00656 Amb_all 6.50e-11 82 263 3 173
Amb_all domain.
COG3866 PelB 5.60e-09 5 298 4 291
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 2.47e-04 123 235 55 181
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam18884 TSP3_bac 0.009 423 444 1 22
Bacterial TSP3 repeat. This entry contains a novel bacterial thrombospondin type 3 repeat which differs from the typical consensus by containing a glutamate in place of one of the calcium binding aspartate residues.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AKD03746.1 4.45e-159 8 468 7 456
AXP82553.1 1.60e-157 34 470 121 555
AKD03745.1 9.70e-152 4 468 3 466
AHW58605.1 1.09e-150 27 467 29 473
ASB47754.1 3.22e-150 30 467 38 464

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8NQQ7 4.53e-53 35 471 21 418
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q2UB83 6.33e-53 35 471 21 418
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
Q0CLG7 1.83e-50 35 471 21 418
Probable pectate lyase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyC PE=3 SV=1
Q5B297 3.73e-50 35 471 21 415
Probable pectate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyC PE=3 SV=1
Q4WL88 7.10e-50 35 471 22 419
Probable pectate lyase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000002 1.000075 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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