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CAZyme Information: MGYG000004570_00655

You are here: Home > Sequence: MGYG000004570_00655

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Treponema_D berlinense
Lineage Bacteria; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema_D; Treponema_D berlinense
CAZyme ID MGYG000004570_00655
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
434 MGYG000004570_3|CGC2 48457.57 7.5979
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004570 2364040 MAG France Europe
Gene Location Start: 84211;  End: 85515  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004570_00655.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 164 367 1.1e-65 0.971830985915493

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00656 Amb_all 5.80e-50 174 367 17 186
Amb_all domain.
COG3866 PelB 7.76e-48 29 430 18 344
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 1.32e-36 174 367 35 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEJ18226.1 9.40e-118 16 434 45 475
AEE17959.1 8.89e-81 8 428 17 442
QPH91275.1 3.39e-67 11 434 5 416
QPI07285.1 2.84e-65 1 434 1 416
QPH93180.1 7.87e-65 11 434 5 416

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VBL_A 1.05e-48 31 428 12 413
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1BN8_A 4.60e-45 1 426 1 417
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
5AMV_A 1.12e-44 29 426 10 396
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2BSP_A 1.24e-44 1 426 1 417
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 8.15e-44 29 426 10 396
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 2.52e-44 1 426 1 417
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
P04960 4.71e-38 169 430 106 385
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1
P18209 7.06e-36 169 344 112 282
Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1
P0C1A5 2.36e-35 169 430 124 404
Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2
P0C1A4 8.63e-35 169 430 124 404
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000367 0.998719 0.000237 0.000236 0.000210 0.000197

TMHMM  Annotations      download full data without filtering help

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