logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000004570_01607

You are here: Home > Sequence: MGYG000004570_01607

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Treponema_D berlinense
Lineage Bacteria; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema_D; Treponema_D berlinense
CAZyme ID MGYG000004570_01607
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
764 MGYG000004570_9|CGC2 81203.23 6.8786
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004570 2364040 MAG France Europe
Gene Location Start: 77535;  End: 79829  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004570_01607.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 478 691 9.6e-74 0.9859154929577465

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00656 Amb_all 9.68e-58 485 694 11 189
Amb_all domain.
COG3866 PelB 4.48e-53 476 759 87 343
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 8.99e-43 462 691 9 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEJ18226.1 1.26e-114 339 764 54 475
AEE17959.1 1.38e-103 340 764 47 448
QPH91275.1 7.60e-73 340 764 25 416
QPH93180.1 7.77e-72 340 764 25 416
QPH96000.1 5.68e-71 340 764 25 416

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VBL_A 3.98e-49 467 691 109 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
5AMV_A 2.26e-47 347 758 12 396
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 3.62e-47 347 758 33 417
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 9.29e-47 347 758 33 417
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.50e-46 347 758 12 396
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 1.98e-46 347 758 33 417
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
P18209 2.66e-43 481 758 107 389
Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1
P04960 8.13e-43 481 691 101 306
Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1
Q51915 1.36e-42 485 758 108 378
Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1
P0C1A5 1.68e-42 481 691 119 324
Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000030 0.021524 0.978449 0.000009 0.000012 0.000009

TMHMM  Annotations      download full data without filtering help

start end
13 30