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CAZyme Information: MGYG000004599_01081

You are here: Home > Sequence: MGYG000004599_01081

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola;
CAZyme ID MGYG000004599_01081
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
462 MGYG000004599_22|CGC1 52940.23 4.9917
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004599 3450206 MAG France Europe
Gene Location Start: 36879;  End: 38267  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004599_01081.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 182 443 1.1e-39 0.7507692307692307

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.46e-09 202 449 229 476
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 4.41e-07 198 377 148 311
polygalacturonase
pfam00295 Glyco_hydro_28 1.40e-05 189 283 88 164
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam13229 Beta_helix 6.53e-05 189 286 26 122
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam05048 NosD 1.53e-04 166 287 2 125
Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT92200.1 1.07e-246 16 462 15 461
ALJ62050.1 1.07e-246 16 462 15 461
QJR73778.1 9.79e-246 16 462 18 464
QJR69445.1 9.79e-246 16 462 18 464
QJR65182.1 9.79e-246 16 462 18 464

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000351 0.998846 0.000290 0.000162 0.000161 0.000149

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004599_01081.