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CAZyme Information: MGYG000004616_01472

You are here: Home > Sequence: MGYG000004616_01472

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; Acutalibacter;
CAZyme ID MGYG000004616_01472
CAZy Family GH55
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
762 MGYG000004616_126|CGC1 85302.25 4.6681
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004616 2217766 MAG France Europe
Gene Location Start: 4049;  End: 6337  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004616_01472.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH55 3 377 3.9e-47 0.5283783783783784

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam12708 Pectate_lyase_3 4.41e-14 149 282 1 145
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
COG5434 Pgu1 9.43e-08 151 260 84 222
Polygalacturonase [Carbohydrate transport and metabolism].
cd05819 NHL 0.002 492 541 16 71
NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADU28861.1 1.29e-224 1 761 214 980
QEM14394.1 2.29e-197 1 762 225 987
AYL99405.1 3.58e-189 1 762 229 997
BBK89258.1 1.91e-187 1 762 229 1004
QQA31095.1 1.91e-187 1 762 229 1004

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000070 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004616_01472.