CAZyme Information: MGYG000004650_00688

Basic Information

• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Marinifilaceae; Odoribacter
• CAZyme ID: MGYG000004650_00688
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1004		111627.96	9.1453

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004650	2976949	MAG	China	Asia

• Gene Location: Start: 313; End: 3327 Strand: -

Full Sequence      

MKTGIFITIITFFLSATGYAQTHNATYSNEHWADSILQSMTLDEKIGQLFMIAAYSNQSE
THEADIEQQIKKYHIGGIIFFQGDPTRQVKLTNRYQKAAKYPLLIGLDAEHGAGWRLKSA
MEFPKMGIIGAIRNDSLIFALGETIARHCHELGVHVNFAPVVDINSNPANPVIGIRSFGE
DPEEVSQKAILFMKGSIAGGVLPVAKHFPGHGDTDTDSHKALPTISHPRRRLDSIELYPY
RALIEAEVPAIMNSHLNVPALDSTGVPASLSPIIVDNLLKGTLGFRGICFTDAMNMKGVT
DNTPPGEAEVKALLAGNDVLLFPQDIAKAVTAIKEAVKTQKISESMITEACRKILACKYT
YALHNLHPSEEAGLWSRLNPATDIALKERLYKEAITLVKNNDSLLPLKRLDTLKIASINF
GSDKVNNFQTMLQRYTQVSNFTAKRKLSEEEVASWQKRLAHYNCIIIYNQAGNNSAKGQF
GYSESLKLLVEKLKGKRIIICQPAIPYGLKPYLSTNPDALLVSYDKHLYSQQYAAQAIFG
GIGIRGQLPVSIDSVYRAGCGICTPKTRLSYESPESKGLSANSFKKIDSLCKRAVSIHAT
PGCQVLVAYKGSVIYDKAFGYHTYAKKKANTTTDIYDIASVTKITATLPAVMKLYDEKII
DLDAPLSRYYNQLTTTDKKNITVREVLCHHAGLKPSLSLFLNAIDKKSLSGRLFTVKKTP
TNTLRLKDRLYVNPNFHFKDSTLSNKPKEGYQFVSPGVYIFPTYKDSIEYAILNSHLATS
PKYAYSDLGFILLQHAVEETTGESISRYCKERFFSRLGMNNTDYKASERLTKSRIIPSCN
DRLYRKTELSGSVHDPTAALMGGVAGHAGLFSTAEDLVKICQMYLNKGIYGGERYLTAAT
VETFTKRNDCFTNNRRGLGFDKPEPDTTKTSPVCKQSSLNSYGHTGFTGIMAWCDPDNDL
IYIFMSNRTYPNEFDNKLVKESFRTKIQEAIYKGLGINCREQIN

Enzyme Prediction     

No EC number prediction in MGYG000004650_00688.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	96	321	2.2e-55	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	2.41e-85	41	355	1	314	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	2.84e-82	40	408	1	351	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00144	Beta-lactamase	1.80e-44	587	975	1	315	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	2.10e-43	557	977	10	372	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].
PRK03642	PRK03642	1.43e-41	569	995	25	431	putative periplasmic esterase; Provisional

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
SNV44480.1	0.0	1	995	1	993
ADY34197.1	0.0	1	995	1	993
AZS31299.1	0.0	32	995	26	989
QRO49790.1	0.0	32	995	26	989
BAX80990.1	6.78e-279	29	995	42	1012

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	2.65e-70	5	559	7	624	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.91e-69	33	559	9	598	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	1.98e-69	18	559	24	628	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	4.49e-67	47	358	31	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]
6K5J_A	2.68e-62	38	552	9	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	1.45e-69	5	559	7	624	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	4.57e-52	40	553	16	597	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
Q7WUL3	8.73e-37	32	409	18	400	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1
C4LEY6	7.37e-32	63	333	12	287	Beta-hexosaminidase OS=Tolumonas auensis (strain DSM 9187 / TA4) OX=595494 GN=nagZ PE=3 SV=1
L7N6B0	1.19e-31	44	358	63	380	Beta-hexosaminidase LpqI OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=lpqI PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000406	0.998928	0.000201	0.000163	0.000154	0.000142

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004650_00688.