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CAZyme Information: MGYG000004652_00568
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Leuconostoc lactis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc; Leuconostoc lactis | |||||||||||
| CAZyme ID | MGYG000004652_00568 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | Pectate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 66477; End: 67760 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 146 | 354 | 1.3e-92 | 0.9859154929577465 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 7.62e-55 | 150 | 426 | 92 | 344 | Pectate lyase [Carbohydrate transport and metabolism]. |
| smart00656 | Amb_all | 6.71e-52 | 157 | 354 | 14 | 185 | Amb_all domain. |
| pfam00544 | Pec_lyase_C | 1.64e-38 | 149 | 354 | 24 | 210 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ANY12284.1 | 3.20e-302 | 1 | 427 | 1 | 427 |
| QEA51674.1 | 7.21e-299 | 1 | 427 | 1 | 427 |
| QEA44524.1 | 1.02e-298 | 1 | 427 | 1 | 427 |
| QEA47973.1 | 2.69e-294 | 1 | 427 | 1 | 427 |
| QOY96953.1 | 6.18e-193 | 8 | 427 | 8 | 426 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1BN8_A | 7.56e-127 | 18 | 426 | 5 | 419 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
| 2BSP_A | 2.15e-126 | 18 | 426 | 5 | 419 | ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis] |
| 5AMV_A | 1.23e-125 | 46 | 426 | 15 | 398 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 2NZM_A | 9.91e-125 | 46 | 426 | 15 | 398 | ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis] |
| 3KRG_A | 2.59e-122 | 46 | 426 | 15 | 398 | ChainA, Pectate lyase [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P39116 | 4.14e-126 | 18 | 426 | 5 | 419 | Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1 |
| Q59671 | 2.50e-66 | 4 | 401 | 6 | 361 | Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1 |
| Q60140 | 8.25e-64 | 50 | 401 | 45 | 360 | Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1 |
| P72242 | 1.59e-63 | 15 | 401 | 12 | 360 | Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1 |
| Q51915 | 6.37e-63 | 50 | 401 | 46 | 355 | Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.001335 | 0.988927 | 0.008934 | 0.000301 | 0.000246 | 0.000220 |