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CAZyme Information: MGYG000004680_01926

You are here: Home > Sequence: MGYG000004680_01926

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lacrimispora;
CAZyme ID MGYG000004680_01926
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
480 MGYG000004680_24|CGC1 54331.29 5.3516
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004680 3596809 MAG Germany Europe
Gene Location Start: 29009;  End: 30451  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004680_01926.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 203 461 2e-44 0.7353846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00295 Glyco_hydro_28 4.55e-15 227 462 86 310
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
COG5434 Pgu1 7.60e-11 204 392 197 398
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 3.80e-09 228 401 159 319
polygalacturonase
PLN02218 PLN02218 4.46e-09 228 460 194 413
polygalacturonase ADPG
PLN02793 PLN02793 4.49e-06 274 436 227 374
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUL53414.1 9.05e-158 1 477 1 475
AIQ30102.1 7.26e-152 1 477 1 475
AWV34205.1 2.25e-149 7 478 7 475
QEU47473.1 1.26e-148 7 479 10 472
ASA22158.1 3.19e-148 9 480 9 478

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q0C7H7 8.16e-09 205 445 141 405
Probable exopolygalacturonase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgxB PE=3 SV=1
Q5AYH4 2.76e-07 194 438 235 484
Probable endopolygalacturonase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaD PE=3 SV=1
A2QW66 3.19e-07 231 394 177 342
Probable exopolygalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgxA PE=3 SV=1
Q27UB2 3.19e-07 231 394 177 342
Exopolygalacturonase A OS=Aspergillus niger OX=5061 GN=pgxA PE=3 SV=1
Q12554 8.68e-07 197 424 111 327
Probable endopolygalacturonase C OS=Aspergillus niger OX=5061 GN=pgaC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000035 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004680_01926.