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CAZyme Information: MGYG000004680_02416

You are here: Home > Sequence: MGYG000004680_02416

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lacrimispora;
CAZyme ID MGYG000004680_02416
CAZy Family PL9
CAZyme Description Pectate lyase L
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
339 MGYG000004680_37|CGC1 36221.02 8.5916
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004680 3596809 MAG Germany Europe
Gene Location Start: 12972;  End: 13991  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004680_02416.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 28 326 6.5e-98 0.8101604278074866

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 2.28e-08 120 292 2 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam07602 DUF1565 2.02e-06 39 186 1 174
Protein of unknown function (DUF1565). These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterized domains such as pfam00395 and pfam03422.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ96087.1 4.21e-180 1 339 1 339
ABX43277.1 9.00e-144 2 337 3 336
QAA30980.1 3.51e-69 5 321 2 337
AUH05047.1 5.53e-63 4 331 11 353
AUH00726.1 5.53e-63 4 331 11 353

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 9.98e-58 35 318 17 315
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 2.45e-29 34 307 4 330
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]
7V6M_A 1.38e-06 34 170 10 167
ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1A6 6.57e-58 35 321 42 343
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 9.97e-57 35 318 42 340
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P22751 8.71e-26 36 307 392 649
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P94576 2.92e-10 36 152 37 159
Uncharacterized protein YwoF OS=Bacillus subtilis (strain 168) OX=224308 GN=ywoF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000304 0.999017 0.000168 0.000184 0.000161 0.000143

TMHMM  Annotations      download full data without filtering help

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