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CAZyme Information: MGYG000004684_00530

You are here: Home > Sequence: MGYG000004684_00530

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella;
CAZyme ID MGYG000004684_00530
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
333 37892.28 7.5818
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004684 976850 MAG Denmark Europe
Gene Location Start: 41;  End: 1042  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 130 306 1.3e-22 0.49846153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.44e-14 130 315 290 468
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADY37536.1 8.91e-102 130 328 243 443
QUT77520.1 1.68e-98 130 323 238 430
QUT59668.1 3.85e-98 130 327 238 434
QEW38187.1 3.85e-98 130 327 238 434
ABR39443.1 7.69e-98 130 327 238 434

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000050 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004684_00530.