logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000004693_00429

You are here: Home > Sequence: MGYG000004693_00429

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; UMGS1375;
CAZyme ID MGYG000004693_00429
CAZy Family GH110
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2012 215329.5 5.7441
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004693 1958211 MAG Sweden Europe
Gene Location Start: 4164;  End: 10202  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004693_00429.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH110 46 630 6.5e-168 0.9872262773722628
CBM51 1283 1421 1.9e-38 0.9925373134328358

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam08305 NPCBM 1.97e-44 1282 1422 2 136
NPCBM/NEW2 domain. This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.)
smart00776 NPCBM 6.62e-29 1282 1421 4 144
This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.
COG5492 YjdB 6.43e-17 1424 1516 169 261
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
COG5492 YjdB 2.56e-16 1669 1759 171 261
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
pfam02368 Big_2 1.81e-13 1437 1514 1 77
Bacterial Ig-like domain (group 2). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BBA55548.1 8.22e-175 46 776 23 759
AFL04872.1 2.88e-173 46 776 23 759
QRI58269.1 3.24e-173 46 776 28 764
VEG17902.1 3.59e-173 26 776 16 782
BAQ98494.1 3.97e-173 46 776 23 759

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7JW4_A 3.75e-37 46 617 27 579
Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A 1.59e-36 46 617 27 579
Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]
2VMH_A 2.18e-22 1280 1420 6 149
Thestructure of CBM51 from Clostridium perfringens GH95 [Clostridium perfringens]
2VMG_A 2.58e-22 1280 1420 12 155
Thestructure of CBM51 from Clostridium perfringens GH95 in complex with methyl-galactose [Clostridium perfringens]
2VMI_A 4.05e-22 1280 1420 6 149
Thestructure of seleno-methionine labelled CBM51 from Clostridium perfringens GH95 [Clostridium perfringens]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B1V8K7 2.95e-152 40 745 28 723
Alpha-1,3-galactosidase A OS=Streptacidiphilus griseoplanus OX=66896 GN=glaA PE=1 SV=1
Q826C5 8.39e-126 17 667 16 622
Alpha-1,3-galactosidase A OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=glaA PE=3 SV=1
Q8A2Z5 4.57e-82 64 617 29 540
Alpha-1,3-galactosidase A OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=glaA PE=3 SV=1
Q64MU6 3.33e-80 32 609 16 552
Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaA PE=3 SV=1
Q5L7M8 1.52e-79 32 609 16 552
Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000440 0.998597 0.000333 0.000227 0.000185 0.000164

TMHMM  Annotations      download full data without filtering help

start end
7 26