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CAZyme Information: MGYG000004708_00078

You are here: Home > Sequence: MGYG000004708_00078

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella;
CAZyme ID MGYG000004708_00078
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
668 MGYG000004708_4|CGC1 72107.11 6.4124
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004708 1820911 MAG China Asia
Gene Location Start: 10941;  End: 12947  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004708_00078.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 91 441 3.1e-57 0.9230769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.38e-36 56 401 78 437
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 4.22e-25 96 436 9 310
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 3.37e-24 63 433 67 412
polygalacturonase ADPG
PLN03003 PLN03003 5.55e-23 52 358 12 302
Probable polygalacturonase At3g15720
PLN02793 PLN02793 7.59e-20 169 374 152 357
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNT65232.1 5.82e-165 7 667 3 668
QEC72689.1 2.12e-73 64 470 60 440
BAV07348.1 1.38e-70 48 476 39 439
QEC57624.1 1.06e-64 53 471 30 435
AHF18012.1 5.68e-60 46 462 22 426

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BHE_A 1.83e-20 75 392 22 335
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
7E56_A 9.02e-14 105 349 18 256
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
6KVE_A 9.72e-14 105 349 26 264
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
6KVH_A 9.72e-14 105 349 26 264
ChainA, endo-polygalacturonase [Evansstolkia leycettana]
2UVE_A 8.73e-10 78 427 172 564
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8RY29 6.46e-24 77 433 82 412
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P35336 3.00e-22 61 373 87 390
Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1
P48978 5.14e-21 61 393 96 411
Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1
P26509 1.33e-19 75 392 48 361
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P18192 1.79e-19 72 392 42 361
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002331 0.994673 0.001906 0.000544 0.000254 0.000231

TMHMM  Annotations      download full data without filtering help

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